Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00504 ATGGAGTGGAACAATTTGAAAGCACCTTCATGGGATTTAACTGAAATGGAACAAACAACCTTAAACAACATAGAAACAATGGATGGTTCAAAGAGGTTTGGAGATTATAGAACACAAGGGGAATTTTCTGTTGATTTGAAGCTTGGACATGTTGGAAATTCTAGTACTGAATCAGTGGTTACAAAGTCCAAAGATGTTGTTAGTGGAGTTTCAAAAATGACATCTTCATCGTCATCAGGCTCGGGTTCATCGAAGAGAGCTAGAGCTATTAACAATGGAACTCAGATAGTTTCATGTCTTGTTGATGGTTGTCAAGCTGATCTGAGTAACTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTTCATTCCAAGACTGCACAAGTCACAATTGGTGGACATAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCATTAGAAGAATTTGATGAAGGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCACAAGCAGAACCTATAACTCGAAGTAGTAGCTTTTTGTCCAATTACCAAGGAACCCAGTTACTACCCTTCGCAAGCTCACACATATACCCATCTACTGCTATGGTGAATCCTACTTGGGGTGGAGGAGATGTTAGACTCCATAGCCACAACCAACATCAACCAATGCACCATCATCATTTGGTCGAAAAACAAGACCTTTTTCTTGGAACATCATCATCTCCAAACAACAGCTACAAAAGTAACAACACTGACCAGAACACAGTAGCCACACTCAACAACCAACATCTTCCAGTTGGTTTGAGTCAAACATTTCATAGAAACACAACCAACCCATTTTCAGATAGATGCAAAATGTTCTGtgacaacaacagcaacaacaataataacaataacaacaataacacTTCCTGTGCTCTCTCTCTTCTGTCATCACCAGTACCACCACAGACACATGATCATCCTGAAAATGGATTGAATCAAATGGTGAATACTCACTCATCATTTATGCAACCATTAGGTTTGAGTTTACATGATCATAGCTTGGGATCTGTGGACTCTGTTTTGGGTTCAAATGATCAGAATCCTCATTGTTTTGGACTTTCTAATGATCAATCTCATTCTCATGAAGGAAATCATAATGAAGCTCCACCATTATTTCCCTTTCAATGGGATTAG 1194 0.3819 MEWNNLKAPSWDLTEMEQTTLNNIETMDGSKRFGDYRTQGEFSVDLKLGHVGNSSTESVVTKSKDVVSGVSKMTSSSSSGSGSSKRARAINNGTQIVSCLVDGCQADLSNCRDYHRRHKVCELHSKTAQVTIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQAEPITRSSSFLSNYQGTQLLPFASSHIYPSTAMVNPTWGGGDVRLHSHNQHQPMHHHHLVEKQDLFLGTSSSPNNSYKSNNTDQNTVATLNNQHLPVGLSQTFHRNTTNPFSDRCKMFCDNNSNNNNNNNNNNTSCALSLLSSPVPPQTHDHPENGLNQMVNTHSSFMQPLGLSLHDHSLGSVDSVLGSNDQNPHCFGLSNDQSHSHEGNHNEAPPLFPFQWD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00504 397 Gene3D - 90 160 IPR036893 GO:0003677|GO:0005634
Tsu02g00504 397 MobiDBLite consensus disorder prediction 163 182 - -
Tsu02g00504 397 ProSiteProfiles Zinc finger SBP-type profile. 96 173 IPR004333 GO:0003677
Tsu02g00504 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 397 IPR044817 GO:0003677
Tsu02g00504 397 Pfam SBP domain 99 172 IPR004333 GO:0003677
Tsu02g00504 397 MobiDBLite consensus disorder prediction 375 397 - -
Tsu02g00504 397 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 10 397 - -
Tsu02g00504 397 SUPERFAMILY SBT domain 97 178 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00504 Tsu-Chr2 4220797 4225184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00504 1 250 SBP-box Gene Family AT5G50670 49.064 1.29e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu02g00504 SBP 2.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00504 - - cam:101507938 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00504 02 4220797 4225184 Tsu02g00504 02 4220797 4225184 ECH
Tsu02g00504 02 4220797 4225184 Tsu07g01143 07 9716263 9719355 PCT