Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00498 ATGTCGAGCGGAAGAAACGGCAAAGGTCGCCGAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACATGTTGGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAACTTTGCACCCTTTGTGGTGTAGATGTTGCGCTCGTTGTATTCTCACCTAGTGGGAAGACATTTTCTTTTGGTCATCCTAATGTTGATACGGTGATAGATCGTTTTCTCTCTCAGGTCCCACCCCAAAACAACGACACCATGCAATTCATTGAGGCACGCCGCAATGCTAACATGAGTGAGCTCAATGCTCAACTGACTCAAATCAACAACACGTTGGACGACATGAAGAAGCATGGTGATGAGCTGAGCCAATTGCACAGGGAGACGAAGGCTTTATTTTGGTGGGCTTCTCTAATTGGTGGGATGAATAGAGTTGAACTTGAATTCCTGAAGAATGCTTTGAAGGAGCTTAAGAATCTTGTTGCACATCATGGTATTGGGATCGCAATTCAGGACACTCCTAATCATACTCTTCCATTTTTTGTTGGCAATGCTTCATCCTCTAACATTCCTCTCCATTTGTCAACTCCTCGACAGGCTCAAATGTTTCCACCACAACTTCCTCAAAATCCTATGTTGCAATCTAATTTGTTTGGCTACAACAATATAGGAGGAGGAGGATATGGAACCCCCGGATTCTTTTGA 708 0.4393 MSSGRNGKGRRKIEMKKMSNESNMLVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSGKTFSFGHPNVDTVIDRFLSQVPPQNNDTMQFIEARRNANMSELNAQLTQINNTLDDMKKHGDELSQLHRETKALFWWASLIGGMNRVELEFLKNALKELKNLVAHHGIGIAIQDTPNHTLPFFVGNASSSNIPLHLSTPRQAQMFPPQLPQNPMLQSNLFGYNNIGGGGYGTPGFF 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00498 235 Gene3D - 88 174 - -
Tsu02g00498 235 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Tsu02g00498 235 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Tsu02g00498 235 PANTHER MADS BOX PROTEIN 8 165 - -
Tsu02g00498 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Tsu02g00498 235 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu02g00498 235 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Tsu02g00498 235 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Tsu02g00498 235 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 8 165 - -
Tsu02g00498 235 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Tsu02g00498 235 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Tsu02g00498 235 Coils Coil 99 119 - -
Tsu02g00498 235 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00498 Tsu-Chr2 4162640 4163347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00498 5 222 Type I MADS-box Gene Family AT5G60440 46.606 4.94e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g00498 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00498 - - mtr:MTR_1g105905 257.299