Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00497 ATGTCGAGCGGAAGGAACGGCAAAGGTCGCCGAAAGATTGAGATGAAAAAGATGAGCAACATGTTAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAACTTTGCACTCTTTGTGGTGTAGATGTTGCTCTTGTTGTCTCACCCCAAAACAACACCACCTTGCAATTCATTGAGGCTCGCCGCAACGCTAACATGATGGAGCTCAATGCTCAGCTGACTCAAATCAATAACACGTTGGACGACGTGAAGAAGCATGGTGATGAGCTAACCCGTTTGCACAAGATGAATGTTTTATTTTGGTGGGCTTGTCCAGTTGGTGGGATGAATATGGTTGAACTTGAATTCCTAAGTAAGGCTTTGAAAGAGCTTAAGAATCTTGTTGCACAAAATGTTATTGGAATTGCAATTCAGGACGCGCCTAGTCAAACTCTCCCATTTTTTGTTGGCAATACTTCATCCTCTAACACCCCTCTCTATATGTCAAATCCTCAAAAGGCTCAAATGTTTCCACCACAACTTTCTCAAAATCATATACTCACTATCTCTCCCAGCTCAGTGAAACGAATCCCTAATTGCAGAATCCTTTTCACAGAATCAAGCCTCACTGAACCGGAATCGAAGCTCTCTCAGATCGTTCCTCTCCCTCCAAATTGA 669 0.4335 MSSGRNGKGRRKIEMKKMSNMLVTFSKRRSGLFKKASELCTLCGVDVALVVSPQNNTTLQFIEARRNANMMELNAQLTQINNTLDDVKKHGDELTRLHKMNVLFWWACPVGGMNMVELEFLSKALKELKNLVAQNVIGIAIQDAPSQTLPFFVGNTSSSNTPLYMSNPQKAQMFPPQLSQNHILTISPSSVKRIPNCRILFTESSLTEPESKLSQIVPLPPN 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00497 222 PANTHER MADS BOX PROTEIN 8 55 - -
Tsu02g00497 222 PANTHER MADS BOX PROTEIN 57 178 - -
Tsu02g00497 222 SMART madsneu2 8 64 IPR002100 GO:0003677|GO:0046983
Tsu02g00497 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 57 IPR002100 GO:0003677|GO:0046983
Tsu02g00497 222 Coils Coil 70 90 - -
Tsu02g00497 222 CDD MADS 9 56 - -
Tsu02g00497 222 SUPERFAMILY SRF-like 9 90 IPR036879 GO:0003677|GO:0046983
Tsu02g00497 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 55 - -
Tsu02g00497 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 57 178 - -
Tsu02g00497 222 Gene3D - 23 102 IPR036879 GO:0003677|GO:0046983
Tsu02g00497 222 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Tsu02g00497 222 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Tsu02g00497 222 ProSiteProfiles MADS-box domain profile. 8 65 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00497 Tsu-Chr2 4154419 4157155 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00497 5 159 Type I MADS-box Gene Family AT5G60440 36.702 7.48e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g00497 SRF-TF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00497 - - mtr:MTR_1g105905 174.096