Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00489 ATGTGGGGATGGCTGATTAGAGAAGGCCGgaaagcatcatcatcatcaccatggAACCTAAACCTCATCCGTAACATGGGTGGCGGTCCTCGTACTTTCCCCGGCGGCGTTAGCAAATGGAAATGGAAACGAATGCACGAAAAACGCGCCAAAGATAAACAGAAAAACCTTCTCGAACAAGAGAAACAACTCTATCAAGCACGCATTCGATCTGAAATACGTTCAACTCATGcaccttcttcatcttcttcttcttccactcATAACCCTATTTCCCCTCATCAACACCTCAAAGCCCTCGCCGATCGTTTCATGAAAGACGGTGCACAAGATCTCTGGAACGATTCCGACGGTCCATTAACCCCACcccaagcccaagcccaaaTTGAAGCCCAATCTTCTCCGCAACTTGATTTACGCAAACTCACACACCAACCTTCAAATCAGAATTTGACTAATTTTTCACAAATTAGGGGTTTCCGTTCTGTTCCTGATGGTAGGGATTTGAGTGATAGGAAGCGTGATTTGAGTGATAAGAAGCGTGTTGGAAcggaaaagagaagaatttgGAGAAAGAATGATTCTTCTAGTGATAGTGAGAGTGAGAATGAAGTTGAATGTCAGAATCAGGGTTATTATTCTAATGTGGGTAGTATTGCTTCTTTGGGTAAACATGATGTGAAAAGGGAGAGGAGAGTGATGCCTAAGAAATTTGATGATGGAACTGATTTTTCAGAGCAGGTTCAGTTGATTAAGTATGAGATTCATAAGAAAAAGAGGTTGAGTCAGAATGGGGAAAATCAGGGTGAGGAACAGGAAAACATTCTTACTCAGACAAGATTTGAGGAGTGTGCTATATCACCATTGACAATCAAAGCACTTTCTTCATCTGGTTACATTCATATGACCCGGGTTCAAAAGACTAGCCTCCCTGTTTGTCTTGAGGATGTGGATGTTATGGTCAAGGCTAAAACTGGCACTGGAAAAACTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATAAATCTCATCGTGCGCCACCAATATATGTTCTTATTCTATGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAATATCATGATGGCATTGGGGTGCAGACTCTAGTTGGAGGTGTACGATTTAAAGATGACCAAAAACGCCTTGAATCAGATCCATGCCAGATACTTGTTGCTACACCTGGTAGGTTGCTGGATCATATTGAAAACAAGTCTGGAATATCTGTTCGACTGATGGGCATGCAGATGCTTGTGCTTGATGAAGCTGATCATTTACTGGACCTTGGGTTTCGAAAGGATATAGAAAAAATTGTTGATTGTTTGCCCCGGCAAAGGCAATCCTTGCTGTTTTCATCAACCATGCCAAAGGAGGTCCGTCGATTATCTCAGGTTGTTTTGAAAAGGGAACACAAATATGTTGATACAGTTGGAATGGGCTGTGTGGAAACTCCTGTTCAAGTAAAGCAATCCTATCTTATCGCTCCACATGAATCACACTTTCAGATGGTGCATCATATTTTGAAGGACCATATCTCGCAAACACCTGATTATAAGGTTATTGTTTTCTGTATAACTGCGATGGTGACATCCCTCACGTATCACCTTCTTCGGGATATGAAACTGAACGTTAGGGAGATACATTCTCGAAAACCTCAGCTGTATCAAACCCGCGTATCAGATGAGTTTAAGGAAGCCAAACAAATGATTCTTGTCTCCTCCGATGTTGGAATAAGTTATCCTGATGTCACATTAGTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATAAATCGTCTAGGAAGAACGGGACGGGAAGGCAAAGAAGGAGAAGGCATATTGCTGATTGCACCATGGGAagagtattttttaaataagatcAAGGATGTCCCTCTAGAGAAATTCCCCTTGCCAGATTTAGATCCACAGGCACAGCTTAAGATTGAGCAATCAATGGCTAAGATTGATAATGACATCAAAGAAGCAGCTTATCATGCTTGGCTTTGTTATTACAACTCCATCATGGAGATTGGGAGGGAGAAGACTACAGTAGCTGAGCTGGCAAACCGATTTTCTGAATCAATTGGTTTACAGAGGCCGCCTTCTCTCTTCCGAAAAACTGCAATAAAAATGGGTTTGAAAGACATTCCTGGCATCAGAATTCGCAGATAG 2238 0.3999 MWGWLIREGRKASSSSPWNLNLIRNMGGGPRTFPGGVSKWKWKRMHEKRAKDKQKNLLEQEKQLYQARIRSEIRSTHAPSSSSSSSTHNPISPHQHLKALADRFMKDGAQDLWNDSDGPLTPPQAQAQIEAQSSPQLDLRKLTHQPSNQNLTNFSQIRGFRSVPDGRDLSDRKRDLSDKKRVGTEKRRIWRKNDSSSDSESENEVECQNQGYYSNVGSIASLGKHDVKRERRVMPKKFDDGTDFSEQVQLIKYEIHKKKRLSQNGENQGEEQENILTQTRFEECAISPLTIKALSSSGYIHMTRVQKTSLPVCLEDVDVMVKAKTGTGKTAAFLLPAIETVLKAMSSNKSHRAPPIYVLILCPTRELASQIAAEAKVLLKYHDGIGVQTLVGGVRFKDDQKRLESDPCQILVATPGRLLDHIENKSGISVRLMGMQMLVLDEADHLLDLGFRKDIEKIVDCLPRQRQSLLFSSTMPKEVRRLSQVVLKREHKYVDTVGMGCVETPVQVKQSYLIAPHESHFQMVHHILKDHISQTPDYKVIVFCITAMVTSLTYHLLRDMKLNVREIHSRKPQLYQTRVSDEFKEAKQMILVSSDVGISYPDVTLVIQVGIPSDREQYINRLGRTGREGKEGEGILLIAPWEEYFLNKIKDVPLEKFPLPDLDPQAQLKIEQSMAKIDNDIKEAAYHAWLCYYNSIMEIGREKTTVAELANRFSESIGLQRPPSLFRKTAIKMGLKDIPGIRIRR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00489 745 Pfam DEAD/DEAH box helicase 303 481 IPR011545 GO:0003676|GO:0005524
Tsu02g00489 745 SMART helicmild6 551 629 IPR001650 -
Tsu02g00489 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 643 IPR027417 -
Tsu02g00489 745 MobiDBLite consensus disorder prediction 109 133 - -
Tsu02g00489 745 CDD SF2_C_DEAD 508 638 - -
Tsu02g00489 745 Pfam Helicase conserved C-terminal domain 528 628 IPR001650 -
Tsu02g00489 745 PANTHER RNA HELICASE 29 121 - -
Tsu02g00489 745 PANTHER RNA HELICASE 256 744 - -
Tsu02g00489 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 279 307 IPR014014 GO:0003724
Tsu02g00489 745 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 256 744 - -
Tsu02g00489 745 Coils Coil 43 68 - -
Tsu02g00489 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 310 493 IPR014001 -
Tsu02g00489 745 Gene3D - 244 494 IPR027417 -
Tsu02g00489 745 SMART ultradead3 298 509 IPR014001 -
Tsu02g00489 745 MobiDBLite consensus disorder prediction 73 93 - -
Tsu02g00489 745 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 33-RELATED 29 121 - -
Tsu02g00489 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 527 665 IPR001650 -
Tsu02g00489 745 Gene3D - 503 726 IPR027417 -
Tsu02g00489 745 MobiDBLite consensus disorder prediction 73 94 - -
Tsu02g00489 745 MobiDBLite consensus disorder prediction 158 209 - -
Tsu02g00489 745 MobiDBLite consensus disorder prediction 164 199 - -
Tsu02g00489 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 488 IPR027417 -
Tsu02g00489 745 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00489 Tsu-Chr2 4076277 4080938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00489 270 654 Eukaryotic Initiation Factors Gene Family AT3G19760 25.743 2.98e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00489 - - lang:109349967 1039.25