Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00486 atgtCTTTCAGCGGAACCCAACAGAAATGCAAGGCTTGTGATAAAACTGTTCACTTGGTTGATTCAATATCTGCTGATAGCAATGTTTATCACAAGAACTGCTTCAGATGTAGCCAATGCAATGGCCTTCTTGCGATGAGCACCTATTCATCATTGGATGGAGTTTTGTACTGTAAGACTCATGCTGAGCAGGTTGCCAAGGAATCTGGCTTCGGCGTCAAGAGATCCCTGTCAGTGGGATCGGGAAGGCCCAGCGAGCTGCCTAGGGCCCCAAGCAAGCTTTCTGCTTTCTTCTCAGGGACTCAAGAAAAATGTTCCGCATGCAAGAAAACCGTATATCCATTGGAAAAGTTGACAGTGGAAGGTGAATTTTACCACAAATCATGCTTCAGGTGTACACATGGAGGATGTTTTCTCAGTCCTTCATCCTATGCTGCACTTGATGGATACATATACTGCAAGCCTCACTTTTCTCAGTTGTTTAAGGCTAAAGGTAGCTATAGCTATCTCTCCAAACAAGCTtcaatgaagaaaaatgaagaaaaactGGCTGCGGAGGCGGCGAAAGCTGCTGAGGAGGCAGCAGCAGCAGCCGCAGCCGCAGCCGCAGCAGGAGAACCAGAAGCAGCAGACACAGAGACAAAAGAAGAACAAGATCCTGCTGCTGACACAGAAGAGGCGTAA 684 0.4591 MSFSGTQQKCKACDKTVHLVDSISADSNVYHKNCFRCSQCNGLLAMSTYSSLDGVLYCKTHAEQVAKESGFGVKRSLSVGSGRPSELPRAPSKLSAFFSGTQEKCSACKKTVYPLEKLTVEGEFYHKSCFRCTHGGCFLSPSSYAALDGYIYCKPHFSQLFKAKGSYSYLSKQASMKKNEEKLAAEAAKAAEEAAAAAAAAAAAGEPEAADTETKEEQDPAADTEEA 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00486 227 SMART lim_4 104 156 IPR001781 -
Tsu02g00486 227 SMART lim_4 9 61 IPR001781 -
Tsu02g00486 227 MobiDBLite consensus disorder prediction 198 227 - -
Tsu02g00486 227 ProSiteProfiles LIM domain profile. 103 163 IPR001781 -
Tsu02g00486 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 169 - -
Tsu02g00486 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Tsu02g00486 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 97 130 - -
Tsu02g00486 227 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 70 - -
Tsu02g00486 227 Gene3D Cysteine Rich Protein 99 169 - -
Tsu02g00486 227 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Tsu02g00486 227 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Tsu02g00486 227 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Tsu02g00486 227 Gene3D Cysteine Rich Protein 2 70 - -
Tsu02g00486 227 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Tsu02g00486 227 Pfam LIM domain 105 160 IPR001781 -
Tsu02g00486 227 Pfam LIM domain 10 61 IPR001781 -
Tsu02g00486 227 Coils Coil 177 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00486 Tsu-Chr2 4051094 4052923 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Tsu02g00486 LIM 5.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00486 - K09377 gmx:100809605 301.982