Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00478 ATGGTTTTGTCCAATTGGAATACTTTGGATTCAGATCCTTGTGACTGGAATGGAGTTTCATGCACCGGGACTCGAGATCATGTCATCAAGCTAAACATATCAGGGGCATTACTAAGAGGGTTTCTTGCTCCAGAAATTGGGAAAATAACCTACTTGCAAGAACTAATCCTGCATGGTAATAATCTCATTGGAATAATACCAAAAGAATTGAGCGCCTTAAAATCACTTAAGGTGTTGGATTTGGGAAAGAATCAATTATCAGGACCAATTCCTCCAGAGATTGGAAATTTGACCGAAATCGTAAAAATAAATATGCAGTCCAATGGTTTGACTGGTAGGTTACCTCCACAGCTTGCAAATTTGAAATACCTTCAAGAACTTCGGTTAGATAGGAATAAGCTTGAAGGGTCTATTCCTGCTACTAGCACTTCAAATTTTCCTCCAAATATGCATCAAATGTATGCCTCAAATGCGAAATCGACTGGCTTCTGTCGTTTGTCGCTGAAAATTGCAGATTTTTCATATAACTTTTTGGTTGGTAGCATACCGAAATGCTTGGAGTATCTTCCAAGAACTAGCTTTCAAGGGAATTGCCTCAATGTCAAAGACATAAAACAGCGGACTAAAGTTCAATGTGctGGAGCTTCACCTGCTCAGGGCCATCCAGTAGTGAAACCAAAGGAAAAATCTAAATCTGTACATGTATCAAAGCATGAAGGAGGCTCAAAACCTGCTTGGCTTTTGGCTCTAGAAATAGCGACCGGAACCATGGTTGGTGCTCTCTTTCTGATTGGTATGCTCACTGCCATCCAAAGGTGTAACAACAAATCATCCATCATTATTCCTTGGAAGAAATCCGCAAGCGAAAAAGAGCAAATTGCAGTATATATAGATTCtgagatgttgaaagatgtgaCAAGGTATAGCAGACAAGAGCTTGAGGTGGCTTGCGAAGACTTCAGCAACATAATTGGATCCTCACCGGATAGTGTGGTCTACAAAGGTACAATGAAAGGTGGACCTGAGATTGCTGCAATTTCCCTCTGCATCAAGGAAGAGAATTGGACGGGTCACCTTGAACTTTATTTTCAGAGAGAGGTGGCAGACTTGGCAAGGATAAATCATGAGAATACAGGAAAGCTACTAGGCTATTGTAGAGACAACAGTCCATTCACAAGGATGCTGGTTTTTGACTATGCATCAAATGGCACACTTTATGAACACCTACATTGTTATGAAGAAGGGTTCCAGTTATCTTGGACGCGGCGCATGAAAATTATCATAGGCATTGCGCGGGGACTAAAGTATTTGCACAATGATATTGAACCTCCATTCACTATCTCAGAGTTGAATTCCAATGCTATATACCTTACAGACGATTTTTCCCCCAAGctggttgattttgaaagttgGCAAAAGATTCTTGAAAGGTCAGAAAAAAATTCCGGTTCCGTTAGCAGCCAAGGCGCTGTTTGTACTCTTCCAAACTCACTTCAAGCACGTTACCTTGATACCAAAGGAAATATTTATGCTTTCGCAGTACTTGTACTTGAGATTATCAGTGGGAGATCTCCATACTGCAAGGACAAGGGGTACTTAATGGATTGGGCTAGGGATTATCTTGAATTGCCAGAAGTAATGTCAAATTTGGTGGATCCTGAGTTGAAACATTTTGGGTCTGATGATCTCAAAGTCTTATGTGAGGTGATAACACTTTGTATTAGTCCTGAAACTGATGTATGTCCATCAATGAGAGAATTATGCAGCATGCTGGAGAGCAAAATTGACACATCAATAAGTGTGGAGCTCAAATCTTTAGCTTGGGCTGAACTAGCACTTTCATCATAA 1848 0.3972 MVLSNWNTLDSDPCDWNGVSCTGTRDHVIKLNISGALLRGFLAPEIGKITYLQELILHGNNLIGIIPKELSALKSLKVLDLGKNQLSGPIPPEIGNLTEIVKINMQSNGLTGRLPPQLANLKYLQELRLDRNKLEGSIPATSTSNFPPNMHQMYASNAKSTGFCRLSLKIADFSYNFLVGSIPKCLEYLPRTSFQGNCLNVKDIKQRTKVQCAGASPAQGHPVVKPKEKSKSVHVSKHEGGSKPAWLLALEIATGTMVGALFLIGMLTAIQRCNNKSSIIIPWKKSASEKEQIAVYIDSEMLKDVTRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAAISLCIKEENWTGHLELYFQREVADLARINHENTGKLLGYCRDNSPFTRMLVFDYASNGTLYEHLHCYEEGFQLSWTRRMKIIIGIARGLKYLHNDIEPPFTISELNSNAIYLTDDFSPKLVDFESWQKILERSEKNSGSVSSQGAVCTLPNSLQARYLDTKGNIYAFAVLVLEIISGRSPYCKDKGYLMDWARDYLELPEVMSNLVDPELKHFGSDDLKVLCEVITLCISPETDVCPSMRELCSMLESKIDTSISVELKSLAWAELALSS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00478 615 PANTHER PROTEIN MALE DISCOVERER 2 1 615 - -
Tsu02g00478 615 Gene3D Ribonuclease Inhibitor 97 216 IPR032675 -
Tsu02g00478 615 Gene3D Transferase(Phosphotransferase) domain 1 400 605 - -
Tsu02g00478 615 ProSiteProfiles Protein kinase domain profile. 318 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00478 615 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 615 - -
Tsu02g00478 615 SUPERFAMILY L domain-like 2 190 - -
Tsu02g00478 615 Pfam Leucine rich repeat N-terminal domain 2 21 IPR013210 -
Tsu02g00478 615 MobiDBLite consensus disorder prediction 224 238 - -
Tsu02g00478 615 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Tsu02g00478 615 MobiDBLite consensus disorder prediction 215 238 - -
Tsu02g00478 615 SUPERFAMILY Protein kinase-like (PK-like) 298 592 IPR011009 -
Tsu02g00478 615 Pfam Leucine rich repeat 51 110 IPR001611 GO:0005515
Tsu02g00478 615 Pfam Protein tyrosine and serine/threonine kinase 321 528 IPR001245 GO:0004672|GO:0006468
Tsu02g00478 615 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00478 Tsu-Chr2 3970932 3975792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00478 2 597 Receptor kinase-like Gene Family AT2G35620 29.016 4.09e-55 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Tsu02g00478 PK_Tyr_Ser-Thr 6.6e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00478 - - gmx:100781978 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00478 02 3970932 3975792 Tsu02g00478 02 3970932 3975792 ECH
Tsu05g00282 05 2089600 2093609 Tsu02g00478 02 3970932 3975792 PCT