Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00469 ATGATGGATAGTAGAGAGGCTATGTCATTCTCTGGTGTTCCTGGTTCATATTACATGCATAGAGGAGGGGTTGATGTTGTAGGGTCTGGTGGCTCTGGAGGGTTCCAAGTACCTCCTGGATTTAGACCTATGCCAAACACTGGCATTATATCTCAGCCAAATGTTAGGGGTCAAGGTGGTAATGTTGACTCTAGTTCAACATTTTCATTGGAGACTCAGTCTCATCATTCTCATGGAAATTTTAATCATGGCATTAATATTGGTGCATCTTCTGGGGGACCTTCTAGTGAGCctgtgaaaaagaaaagagggaGACCGCGGAAGTATGGTCCTGATGGAACTGTTTCTTTGAAACTGTCTCCAATGTCTGCCCCTGCTAATTCTACTCAGGGTTCATCCACACCTTCTGATAAACGGGGTAGAGGCCGCCCTCGTGGATCTGGAAGGAAACAACAGCTAGCTACATTAGGTGACTGGATGACCAGTTCAGCAGGGTTGGCTTTCTCGCCTCATGTTATCACCATTGGAGCTGGGGAGGACATTGCAGCAAAGCTATTGTCGTTATCACAGCAGAGACCAAGGGCTCTGTGCATCTTGTCGGGCACTGGGATAGTTTCTAAAGTTACTCTGCGACAACCTGCCTCTACCAATGCCGGTGTATCTTATGAGGGAAAATTCCAAATATTAAGCTTGTCTGGTTCTTATTTGGTTGCTGAAGATGCTGGACCCTCCACTCGAACGGGTGGCATAAGTGTTTCTCTTTCTAGCCGTGATGGTCATGTTATTGGTGGCGGTGTTGCTGTTCTTATTGCCGGAAGCCCAATACAGGTGGTGGTTTGCAGTTTTGTATACGGTGGCAGCTCAAAGGTAAAGACTATTAAGCAAGGGGACACTGCCACCAATGGTGAAAGTTCAGAGGCTCATGATGATAAGTTAGCTTCCCCGGCCAGTGCTCCACCTAGTCAAAACTACATCTCTTCTCCAACAGGCATGTGGCCTAGACAACAGCCATCAGACGTGAAAAGCGCACACACACATACGGGCTTTGACTTGACAAGAGGATGA 1065 0.4638 MMDSREAMSFSGVPGSYYMHRGGVDVVGSGGSGGFQVPPGFRPMPNTGIISQPNVRGQGGNVDSSSTFSLETQSHHSHGNFNHGINIGASSGGPSSEPVKKKRGRPRKYGPDGTVSLKLSPMSAPANSTQGSSTPSDKRGRGRPRGSGRKQQLATLGDWMTSSAGLAFSPHVITIGAGEDIAAKLLSLSQQRPRALCILSGTGIVSKVTLRQPASTNAGVSYEGKFQILSLSGSYLVAEDAGPSTRTGGISVSLSSRDGHVIGGGVAVLIAGSPIQVVVCSFVYGGSSKVKTIKQGDTATNGESSEAHDDKLASPASAPPSQNYISSPTGMWPRQQPSDVKSAHTHTGFDLTRG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00469 354 MobiDBLite consensus disorder prediction 295 354 - -
Tsu02g00469 354 MobiDBLite consensus disorder prediction 49 152 - -
Tsu02g00469 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 2 354 IPR039605 GO:0003680
Tsu02g00469 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 284 - -
Tsu02g00469 354 MobiDBLite consensus disorder prediction 120 137 - -
Tsu02g00469 354 CDD DUF296 170 282 IPR005175 -
Tsu02g00469 354 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 2 354 - -
Tsu02g00469 354 MobiDBLite consensus disorder prediction 316 345 - -
Tsu02g00469 354 ProSiteProfiles PPC domain profile profile. 162 306 IPR005175 -
Tsu02g00469 354 Gene3D - 170 297 - -
Tsu02g00469 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 283 IPR005175 -
Tsu02g00469 354 MobiDBLite consensus disorder prediction 49 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00469 Tsu-Chr2 3927086 3931036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00469 2 354 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 45.780 1.68e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00469 - - gmx:100813888 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00469 02 3927086 3931036 Tsu02g00469 02 3927086 3931036 ECH
Tsu05g00276 05 2049812 2053161 Tsu02g00469 02 3927086 3931036 PCT