Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00458 ATGGTGCAAGAAAACATGATGAAGGAACAACTTGCTTTGGCAGTTAGAAGCATTCAATGGAGTTATATAATTTTCTGGTCTGAATCTGCTAACCAACCTGGGGTGTTGAGTTGGGGGGAAGGATATTACAATGGAGAAATTAAGACAAGGAAAACAAGTCAAGAAGTGGAACTTAGTTCTGATGAAATAGGCTTGCAGAGGAGTGAGCAACTGAGAGAGCTTTTCAGGTCCCTTAAACCTACAGAAATAAGTCCTCCAACAAAAAAACCTTCTGCAGCACTTTCACCTGAAGACCTCACAGATACTGAGTGGTACTATTTGGTTTGCATGTCCTTTGTATTCGACATTGGCCAAGGGTTACCAGGAAGAGCTCTAGCAAATGACGAACCAATTTGGCTTATGGATGCCTATTCGGTTGATTGCAAAGAGTTTAGTCGCGCTCTCCTCGCAAAGAGTGCATCTATTCAGACAGTGGTGTGCTTTCCTTTCATGAAAGGGGTTATTGAGCTAGGCACAACTGATATGATAATGGAAGATCTCAGTATCATTCAACAGATCAAAACTTCTTTATCGAATATTCTAAGTGTTGATGTCCCTATTAACGGTCAAGTTACATTGAATTCGGGAAATAATGAAGATAATGAAAATGTAGCATTTGATCATATTGATTACAATGTTGAATTAATTCCAGAAGTTGGTAATGACATAATGAACACAACAATCTCTCCTAATGGAAGTTCAAATGCATTACAAACCAATCAACTACCAGATGAAACATTCATGGTTGAAAACTGGCAAATTATGGATGATGATTTAATCCATAACTCCATGAATTCAAGTGATTGCATATCACAAACTATTGCTTCTGTTCCTAGAAGTGGAGAAGATTGCAACCATAACCAAAAAATGACTTTAGTGGATCCACTACGTTATGATTCCCATTATCAGAATGTTCTTTCAGAACTATTGACAAGCAATGACCAGTTAACTATGGGAATgcattttcaaaactttcaTCAAGATTCATGTTTTTGTGTTTGGAACAAAAGAGGGGCAGTGGATTGCCAAAGGCCAAGACAAGGTAACTCACAAAAGCTATTGAAGAAGATGTTGTTAGAAGTTCCGCGGATGCACATGGATGGTTTGGTTGAATCTCAAGAAGAGAATGACTATAGAGAAGGAACAAGACTAGAGCCTGATGAAGGTATGAACCATGTTTTATCAGAAAGAAGGAGAAGAGCTAAACTAAATGAAAGGTTTTTAACTCTTAGATCAATGGTCCCTTCAAATAGTAAGGATGACAAAGTTTCTATACTAGATGATGCAATTGAATACCTTAGCAAGCTTGAAAAAAGGATAAAAGAGTTAGAAGCTCAAAAAGAGCCAATAGATACAGAGTCTAGAAGTAAAAAATCACATCATGATATGTTGGAGAGGACTTGTGATGATTATTATAACAACAAAACTAACAATGGCAAGAAACcaatgatgaagaagaggaaAATATGTTCTGATACTTCAAAAGGAAGTTCTAATAGTGATGTTATTGTCAGTATGAGTGACAATGGAGTTGTGATTGAAATGAAGTGTCCTTCTAAAGCAGGAAGAATATTGGAAATTATGGAGGCAGTTAACAATCTTAACATGGATTTTAATTCAGTTCAATCAACAGATTCTGATGGGAGGCTTCATGTGATCATTAGATCTAAGTTCAAAGGACCAGCTAATGCAACAACAAAAAGGATCAAACAAGCCCTCCAAAAAGTGGCTTCAAAGTTTTGA 1782 0.3614 MVQENMMKEQLALAVRSIQWSYIIFWSESANQPGVLSWGEGYYNGEIKTRKTSQEVELSSDEIGLQRSEQLRELFRSLKPTEISPPTKKPSAALSPEDLTDTEWYYLVCMSFVFDIGQGLPGRALANDEPIWLMDAYSVDCKEFSRALLAKSASIQTVVCFPFMKGVIELGTTDMIMEDLSIIQQIKTSLSNILSVDVPINGQVTLNSGNNEDNENVAFDHIDYNVELIPEVGNDIMNTTISPNGSSNALQTNQLPDETFMVENWQIMDDDLIHNSMNSSDCISQTIASVPRSGEDCNHNQKMTLVDPLRYDSHYQNVLSELLTSNDQLTMGMHFQNFHQDSCFCVWNKRGAVDCQRPRQGNSQKLLKKMLLEVPRMHMDGLVESQEENDYREGTRLEPDEGMNHVLSERRRRAKLNERFLTLRSMVPSNSKDDKVSILDDAIEYLSKLEKRIKELEAQKEPIDTESRSKKSHHDMLERTCDDYYNNKTNNGKKPMMKKRKICSDTSKGSSNSDVIVSMSDNGVVIEMKCPSKAGRILEIMEAVNNLNMDFNSVQSTDSDGRLHVIIRSKFKGPANATTKRIKQALQKVASKF 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00458 593 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 449 IPR011598 GO:0046983
Tsu02g00458 593 PANTHER TRANSCRIPTION FACTOR EGL1 4 589 - -
Tsu02g00458 593 PANTHER TRANSCRIPTION FACTOR TT8 4 589 - -
Tsu02g00458 593 Gene3D - 399 462 IPR036638 GO:0046983
Tsu02g00458 593 Pfam Helix-loop-helix DNA-binding domain 404 450 IPR011598 GO:0046983
Tsu02g00458 593 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 188 IPR025610 -
Tsu02g00458 593 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 403 465 IPR036638 GO:0046983
Tsu02g00458 593 Coils Coil 439 466 - -
Tsu02g00458 593 SMART finulus 406 455 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00458 Tsu-Chr2 3843044 3847286 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00458 2 590 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 42.681 1.27e-154 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g00458 bHLH-MYC_N 1.6e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00458 - - gmx:100808167 771.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00458 02 3843044 3847286 Tsu02g00458 02 3843044 3847286 ECH