Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00454 ATGGAGAAGGAGGAAGATGTGAAGGTTGGAGCAAACAAATTCTCAGAGAGACAGCCATTAGGGACAGAAGCTCAAAGTGACATCAAAGACTACAAAGAACCACCACCAGCTCCATTATTTGAGCCTGGTGAGCTCAAATCATGGTCTTTTTACAGAGCTGGAATAGCCGAGTTCATAGCTACTTTCTTGTTCTTGTACATTACCATTTTGACTGTAATGGGTGTTAACAGATCAACCTCCAAATGTTCCTCTGTTGGCATTCAAGGTATTGCTTGGTCTTTTGGGGGTATGATCTTTGCTCTTGTTTACTGCACTGCTGGAATTTCAGGTGGACACATAAATCCAGCTGTGACATTTGGTCTGTTTTTGGCAAGGAAGCTCTCACTAACAAGAGCTATATTCTACATTGTGATGCAATGTCTTGGGGCTATTTGTGGTGCTGGTGTGGTGAAAGGTTTTGAAGGTAATGCTAGGTATGAGTTGTTCAATGGTGGAGCTAATTTTGTAAATCCTGGATACACTAAAGGTGATGGACTTGGAGCCGAGATTGTCGGTACCTTTGTTCTTGTTTACACTGTTTTTTCTGCCACTGATGCCAAGAGAAATGCTAGAGACTCTCATGTTCCTATATTGGCTCCTCTTCCCATTGGGTTTGCTGTGTTCTTGGTCCACTTGGCTACAATTCCCATTACAGGAACTGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTTAACAGGAACTTAGCTTGGGATGACCatTGGATATTCTGGGTTGGACCTTTTATTGGAGCTGCTCTTGCTGCTGTGTATCACCAGATTGTCATCCGAGCCATTCCTTTCAAGACAAGGGCTTGA 864 0.4352 MEKEEDVKVGANKFSERQPLGTEAQSDIKDYKEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYITILTVMGVNRSTSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYELFNGGANFVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRNLAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKTRA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00454 287 TIGRFAM MIP: MIP family channel proteins 56 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 SUPERFAMILY Aquaporin-like 44 279 IPR023271 -
Tsu02g00454 287 MobiDBLite consensus disorder prediction 1 31 - -
Tsu02g00454 287 PANTHER AQUAPORIN PIP1-2-RELATED 3 286 - -
Tsu02g00454 287 Pfam Major intrinsic protein 44 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PRINTS Major intrinsic protein family signature 257 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PRINTS Major intrinsic protein family signature 181 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 3 286 IPR034294 -
Tsu02g00454 287 CDD MIP 52 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu02g00454 287 Gene3D Glycerol uptake facilitator protein. 37 285 IPR023271 -
Tsu02g00454 287 ProSitePatterns MIP family signature. 112 120 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00454 Tsu-Chr2 3819644 3821499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00454 3 286 Major Intrinsic Protein MIP AT4G23400 86.268 2.10e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00454 K09872 - gmx:100793242 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00454 02 3819644 3821499 Tsu02g00454 02 3819644 3821499 ECH