Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00452 ATGGCGCCATGGTGGGGAAAGCTTTCGTCCAAGGAGGTGAAGGAGAAGAAGACAAAGCGGGAAAATATTTTTGATATGATACAACGAAAATTTAAAAAGGCTTcagaagagaagaactgctaTAAATCAGAAGGATCTAGGAAACATCATAGTAGCACTATCTCAAAGAAGGGATCTAGATCCTTTGGACcttcaacaaaatcacggtCACCGTCTCCAACTGTGTCCCGCTGTCTAAGTTTTGCAGACAATCATTATTCTCGGCCAGTCCCAGTGTCGGGCTCATCCCTTCCTACTGTTAGTAATGCAAATTCTGAAATTATTTTAACATCAAAACTGGAAAGAGCCACAGGAGATCCTACACCTAGACCATCTATATATTTTCCCCTGCCAGAACCTGGTTACCTAACTATAAGGGGCGAAGTTACAGATGTGGAAGGAGATATAGTCACTGCATCTGTTTCCTGTAACAGCTCTATTGATAGTGGTGACTCGTCTGATTCACATCCTGTTAGTCCTCTGGCATCTGACTTTGAAAATAGAAACACAGCCACCATTAACAATTCTTTCAGTGCGGTGCGCAAAGATCAATCACATATTACTATCGAAAGAACCTCAAGAGCACCCTCAAAACAAGCTCATAAATTGAGCAACCACAAGCTTTTGTCTACCTCGCCAAAAAGGGTTGCTTTGCCTCTGCAAGTAGGTCGCCCGGGTGGTTTTTGCAGTGCTCCAGATAGTTCAAAGTCTAGTCCCAGAAGTCCAATGCGAGCATTTGGTCCAGAGCAAGTGTTAAACTCAGGATTATGTATAGGAAAGCCTTATCCAGATATAGCTTCAGGGCACTGCTCTAGTCCAGGTTCAGGCCATGATTCTAGTAATAATTCAGTTGGTGGGGATCTGTCAGCAGTTAGAGCACACAACAAGTGTAGCGCTGAGTGTTCCCCAATACCTAGTCCCAGAATGACAAGCCCCGGTCCCAGTTCCAGGATACAGAGCAATAATGTCAGCCCTCTACATCCAAAATCTGGAGGTGCCGCATCAGAGTTTCCTACAAGACGTCCTGATGTCATTAAACAACAAAGTCATCGATTACCGCTTCCTCCAATAAAAGTGACTAAATCTTGTCCATTTTCTCCAACCTATTCTGCATCTTCAACTCCTTCAGCTCCTCGAAGTCCTGCCAGACCAGAAAATTCAACAAGCCCTGGTTCACGCTGGACAAAAGGGCAGTTGCTTGGAAGGGGAACATTTGGGCATGTTTATCTTGGTTTCAGCAGAGAAAGTGGCGAGATGTGTGCAATGAAGGAGGTAACCCTTTTTTCAGATGACCCTAAATCACGAGAATGTGCGCAGCAACTTGGCCAAGAAATTGCACTGCTAAGTCAGTTGCGGCATCCAAACATAGTCCAGTATTATGGGTCTGAAACGGTAGATGACAAACTTTATATTTACTTGGAGTACGTTTCTGGTGGGTCAATCTATAAATTGCTTCAAGAATACGGACAATTAGGTGAAATTGCAATTCGGAATTACACTCGTCAAATTCTTTCAGGACTCGCATATTTGCATGCAAAGAACACTGTTCACagGGACATCAAAGGAGCAAACATATTGGTGGACCCTAATGGACAGATAAAACTGGCAGATTTTGGGATGGCAAAGCATATAACTGGGCAGACTATTCCATTTTCTTTTAAAGGAAGTCCTTATTGGATGGCACCTGAGGTTATAAAAAATTCAGATGGTTGTAATCTTGCTGTTGATATATGGAGTCTGGGATGCACTGTTTTGGAGATGGCAACAGCAAAACCTCCTTGGGGCCAGTATGAAGGGGTTGCTGCTATGTTTAAGATTGGGAACAGTAGAGAACTTCCTACAATTCCAGATCATCTATCAGAAGAAGGGAAAGATTTTGTCAGGCTTTGTTTGCAAAGGGATCCAATTGATCGTCCTTCAGCTAATCAACTTCTAGATCACCCATTTGTTAAAAGTGCTTCGTTGGAAAGATTCATTCTGAATGCTGATCCTTCAGAATCCCCATCTTCTGTTATAAATGCAATGAGATCTCTGGCCATTGGATCGTCTAAACATAATGTATGTTTAGACTTGGAAGCAGCTGGTATCCCTGGTATCCCTCCGACTAGAAGCTTCAGAGTTGGTTATGGACCAagTAATGCTCATAAACCACCAAGGATCGTCTCATGTCCCGCTTCTCCATCTTTGGGGCTACGTTTGCCTTCAAGATCAACGAATTCAAGTGGAATGATACCTCCGTCTCATAATGCATCTGGCCCATCTACTCCGCAAACCTGTAGAAGTGGGACAATCCCATATCATCAAACAAAGCAACCTATATTCCCACAAGAAGCTCTGGGTATCATTCCAAAGTCTCCTAATGGTTTTTGGTCAAATGGAAGCACTGCTTATCAAGGTCCAAAGCATGGTCAGATTCAGAGAAAAACTCCAGATAGACATGCTTGCCGCCGGGATATAATTTCACATGAAAATGATTCTCTTGCAAACCATAATAGGAGGGCCATTGAAGGAGGAGTCCGAAGAGAATTTCAACAACAGCGGGAGAGGGGTAATGCGCGGCCAAATGCATCCCATAGATCATAA 2622 0.4272 MAPWWGKLSSKEVKEKKTKRENIFDMIQRKFKKASEEKNCYKSEGSRKHHSSTISKKGSRSFGPSTKSRSPSPTVSRCLSFADNHYSRPVPVSGSSLPTVSNANSEIILTSKLERATGDPTPRPSIYFPLPEPGYLTIRGEVTDVEGDIVTASVSCNSSIDSGDSSDSHPVSPLASDFENRNTATINNSFSAVRKDQSHITIERTSRAPSKQAHKLSNHKLLSTSPKRVALPLQVGRPGGFCSAPDSSKSSPRSPMRAFGPEQVLNSGLCIGKPYPDIASGHCSSPGSGHDSSNNSVGGDLSAVRAHNKCSAECSPIPSPRMTSPGPSSRIQSNNVSPLHPKSGGAASEFPTRRPDVIKQQSHRLPLPPIKVTKSCPFSPTYSASSTPSAPRSPARPENSTSPGSRWTKGQLLGRGTFGHVYLGFSRESGEMCAMKEVTLFSDDPKSRECAQQLGQEIALLSQLRHPNIVQYYGSETVDDKLYIYLEYVSGGSIYKLLQEYGQLGEIAIRNYTRQILSGLAYLHAKNTVHRDIKGANILVDPNGQIKLADFGMAKHITGQTIPFSFKGSPYWMAPEVIKNSDGCNLAVDIWSLGCTVLEMATAKPPWGQYEGVAAMFKIGNSRELPTIPDHLSEEGKDFVRLCLQRDPIDRPSANQLLDHPFVKSASLERFILNADPSESPSSVINAMRSLAIGSSKHNVCLDLEAAGIPGIPPTRSFRVGYGPSNAHKPPRIVSCPASPSLGLRLPSRSTNSSGMIPPSHNASGPSTPQTCRSGTIPYHQTKQPIFPQEALGIIPKSPNGFWSNGSTAYQGPKHGQIQRKTPDRHACRRDIISHENDSLANHNRRAIEGGVRREFQQQRERGNARPNASHRS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00452 873 SMART serkin_6 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00452 873 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00452 873 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 806 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 32 51 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 836 873 - -
Tsu02g00452 873 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524
Tsu02g00452 873 MobiDBLite consensus disorder prediction 281 411 - -
Tsu02g00452 873 SUPERFAMILY Protein kinase-like (PK-like) 405 739 IPR011009 -
Tsu02g00452 873 CDD STKc_MEKK1_plant 406 663 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 324 341 - -
Tsu02g00452 873 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 806 - -
Tsu02g00452 873 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00452 873 MobiDBLite consensus disorder prediction 752 771 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 376 408 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 197 259 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 159 180 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 285 301 - -
Tsu02g00452 873 Gene3D Transferase(Phosphotransferase) domain 1 405 688 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 32 76 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 804 824 - -
Tsu02g00452 873 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00452 Tsu-Chr2 3808670 3812763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00452 3 784 MAP Kinase Kinase Kinase AT1G63700 56.625 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Tsu02g00452 Pkinase 1.8e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00452 K20717 - gmx:100814422 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00452 02 3808670 3812763 Tsu02g00452 02 3808670 3812763 ECH
Tsu02g00452 02 3808670 3812763 Tsu07g01318 07 11553039 11557322 PCT