Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00441 ATGGAAAACGGGTCTTCCCTTGATCGCCTTGAAGCTAAAACTTTTACCGAATCTCATGGAAACGGCGATTGTCTTATTGAGGACCTTGTTGATAGTCCTGATCATGACAGTGCTAAACAAAAATCTTTGTTTTCTCAACAATTTTCGGTTTATCTTGAGGAGAATTGCAGTAGAGACAATATGAGGCCTGTGCCTGTGATACTTGGTGACGGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGCAGTATCAAGAAATGGGTTGTGGTATTCTGTGATAACTGAACTGGGTTTGGACCTTCATGTTTTGGCTTCGGTGAAATTAATTTATGACAAATACCTGCGTGATTTCGAAGGTTGGCTCAGCAAAACCAAAAGAGTGGCGGTTAACCAAACCAGTGATGGTTCTTTATTGGGGACCGAAAACctaataatcaacaaattacCGAATTTTCACATGAATGTGGAACCATTACCGAATTTTCTGGCGGTGAGAAAGAATGCTGAACCAAACAGTGGATCATCTTCTCAGAAGGTGACAATGCATCCTGTCATGTATGAGGATTCTGTTGATCACCAAGGTACTATGGAATTGAGACGTAGTAAAAGGCGCCATATCTCTTCTAACTGTCGCTGCACTAGCTGCAATTCTAATTCATGCTCTGCTAATGGAAATAAGTTGCATTGTTCAGTCAATATGGCTGCCAAACCAGATGctactgaaaagaaaaaatcgGCTGCCAAATCAAAATCGGCCAAAAAGAAAACATCTGAGCCATCTAGTAATGAGTTTCCTGTAAAGCATGTTTCTATAGGTCCTCGTTTCCAAGCGGAAGTCCCACAATGGACTGGTGAAATATCTGAGAGTGACTCTAAATGGTTAGGCACACAAGTATGGTCTGTTAAAGATGACTCAGAACTTGCTACcaaaattgatcttgttgggAGAGGAAGACGGGGAAAGTGTAGCTGTGACATTCAAGGTTCTGTTGACTATGTCAGATTTCTCATTGCTGAAAACAGGATGAAACTGAAGCTTGAATTGGGTTCTGCATTTTACCAATTGGGATTTGATAAAATGGGCGAGGAAGTTTCGCTTCAATGGACAGCTGATGAAGAAAAGATATTTAAGGATGCAATGAGTTCAAATACCCCCTCCCAGAAGAAGTCTTTTTGGGACAATCCATCCAAATACTTAATTGAGAAGACAAGAAAAGACGTGGTGAGTTATTATTTCAATGCATATATTATTAAACTAAGAAGCTATCAGAATCGAGTGACTCCGGAGAATGTTGACAGTGACAATGACGAAATCGAATTTGGATCTTTTGGTGATAAGCTATTTTGA 1374 0.3865 MENGSSLDRLEAKTFTESHGNGDCLIEDLVDSPDHDSAKQKSLFSQQFSVYLEENCSRDNMRPVPVILGDGQLLDLYQLFSLVKEKGGYDAVSRNGLWYSVITELGLDLHVLASVKLIYDKYLRDFEGWLSKTKRVAVNQTSDGSLLGTENLIINKLPNFHMNVEPLPNFLAVRKNAEPNSGSSSQKVTMHPVMYEDSVDHQGTMELRRSKRRHISSNCRCTSCNSNSCSANGNKLHCSVNMAAKPDATEKKKSAAKSKSAKKKTSEPSSNEFPVKHVSIGPRFQAEVPQWTGEISESDSKWLGTQVWSVKDDSELATKIDLVGRGRRGKCSCDIQGSVDYVRFLIAENRMKLKLELGSAFYQLGFDKMGEEVSLQWTADEEKIFKDAMSSNTPSQKKSFWDNPSKYLIEKTRKDVVSYYFNAYIIKLRSYQNRVTPENVDSDNDEIEFGSFGDKLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00441 457 MobiDBLite consensus disorder prediction 246 275 - -
Tsu02g00441 457 SMART ELM2_2 278 328 IPR000949 -
Tsu02g00441 457 MobiDBLite consensus disorder prediction 246 270 - -
Tsu02g00441 457 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 12 140 - -
Tsu02g00441 457 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 171 455 - -
Tsu02g00441 457 SMART bright_3 39 132 IPR001606 GO:0003677
Tsu02g00441 457 Gene3D - 26 142 IPR036431 GO:0003677
Tsu02g00441 457 SMART ARID_2 35 127 - -
Tsu02g00441 457 SUPERFAMILY ARID-like 38 138 IPR036431 GO:0003677
Tsu02g00441 457 CDD ARID 44 127 - -
Tsu02g00441 457 Pfam ARID/BRIGHT DNA binding domain 46 127 IPR001606 GO:0003677
Tsu02g00441 457 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Tsu02g00441 457 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 12 140 - -
Tsu02g00441 457 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 171 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00441 Tsu-Chr2 3720956 3722943 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu02g00441 ARID 5.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00441 - - gmx:100819320 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00441 02 3720956 3722943 Tsu02g00441 02 3720956 3722943 ECH