Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00439 ATGGCAAACGGGTCTTCTCTTGATCGACTTGAAGCTAAAACTTTTACCGAATCTCATGGAAATGGCGATTGTCTTATTGAGGATTGTGTTGATAGTGCCGGTCATGACAAAGCTAAACAAAAGTCtttgttttgtcaaattttttcGGTTTATCTTAAAGAGAATTGTAGTAGGGGTAATGTTAAGCCTGTGCCTGTGATGCTTGGTGACGGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAAAGGTGGGTATGATGTGGTGTCGAGAAAAGGTTTGTGGGATTCTGTGATAGTTGAATTGGGTATGGACATTTGTGTTTTGGCATCGGTGAAATTAGTTTATGATAAATATCTGCATGATTTCGAAGGTTGGCTCAGCAAAACTTTTGAAGAGAGGAGTATTAAAAATGGGAATAATGGGTGTTTGAATTCATTGCCATTAGATCTGGAAAAAGAGTTTCGCAGCCTTTTATGCTCAAATCTAAAAGACAAAGATGATGATTTTGTCCCGTTAGAATCGAGCAACATCATAAAGCATATTGATTTGGTTAACCAAAAGAGTAGTGGTTATTTATTGAATTCCAAAAACCTAACCAACAAATGTTTGGATGTCCAACATGTTGATGGTGACAGTAATGATGATGACGATAAATTTTTTGGTAACGGTGTTAAGGACGGTCTACCTGCCTCTCGCAAACGTAAACGGGAATCGATATCAGGAATGGTAAACTGGGTGAGGCATACTGCAAAACATCCGTTTGGTCATGTAGCTCTACCATTACCAGAACCATCAAAATGGAAGGAGTACAAAGGAGGTAATGACTTTTTTGTTCAGCTGCTGAGGACAAGAGACGTTCTAGCGGTCAGAAAGAATGCGGAACCAAATAGTGGACCATCTTCTCAGAAGGTGAAGATGCATCCTGCCATGTACGAGGATTCTGTTGGTCACCAGGGCACTATGAAATTGAGATGTAGTGAAAGGCTGCCTATCTCTCCTAAATCTCGCTGCAGTTGCTGCAATTCTAAATCATGCTCTGCTAATGGTTCAGTCAATATGGCTGCCAAACCAGATGctactgaaaagaaaaaatcgacttccaaatcaaaatcgagcaaaaagaaaaaacctgTGCCATCTGAGGATGATTTTCGTGTAAAGCATGTTTCTATAGGTCATCTTTTCCAAGCGGAAGTCCCGCAATGGACTGGTGAAGTTTCTGAGAGTGACCCTAAATGGTTAGGCACACAAGTGTGGCCTGTTAACGATGACTCAAAACCTACTACCAAAACAGAATTTGTTGTGAGAGGAAAGTGTAGTTGCGACATTCAAGGTTCTGTTGACTGTGTCAGATTTCTCATTGCTGAAAACAGAATGAAACTGAAGCTTGAATTGGGTTCTGCATTTTACCAATGGGGATTTGATAAAATGGGCGAGGAAGTTTCGCTTCAATGGACAGCTGAGGAAGAAAAGAAATTTAAGGATGCAATGAGGTTAAATATCCCCTCCCAAAACAAGTCTTTTTGGAACAATCCATCCAAATACTTTCTTAAGAAGACAAGAAAAGACATGGTGAGCTATTACTTCAATGCATATATTATTCAACTCAGAAGCTATCAGAATCGAGTAACTCCGAAGACTGTTGATAGTGATGACGACGAAGTCGAATTTGGATCTTTTGGTGATGGTTTTGGGAGGAACAGTATCAAGCATCCACCTATGGAATTCATGGAGTGCTCAGAGAACAAGCAATGCTGGGATTATGAGTAG 1782 0.3866 MANGSSLDRLEAKTFTESHGNGDCLIEDCVDSAGHDKAKQKSLFCQIFSVYLKENCSRGNVKPVPVMLGDGQLLDLYQLFSLVKEKGGYDVVSRKGLWDSVIVELGMDICVLASVKLVYDKYLHDFEGWLSKTFEERSIKNGNNGCLNSLPLDLEKEFRSLLCSNLKDKDDDFVPLESSNIIKHIDLVNQKSSGYLLNSKNLTNKCLDVQHVDGDSNDDDDKFFGNGVKDGLPASRKRKRESISGMVNWVRHTAKHPFGHVALPLPEPSKWKEYKGGNDFFVQLLRTRDVLAVRKNAEPNSGPSSQKVKMHPAMYEDSVGHQGTMKLRCSERLPISPKSRCSCCNSKSCSANGSVNMAAKPDATEKKKSTSKSKSSKKKKPVPSEDDFRVKHVSIGHLFQAEVPQWTGEVSESDPKWLGTQVWPVNDDSKPTTKTEFVVRGKCSCDIQGSVDCVRFLIAENRMKLKLELGSAFYQWGFDKMGEEVSLQWTAEEEKKFKDAMRLNIPSQNKSFWNNPSKYFLKKTRKDMVSYYFNAYIIQLRSYQNRVTPKTVDSDDDEVEFGSFGDGFGRNSIKHPPMEFMECSENKQCWDYE 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00439 593 SMART ELM2_2 393 445 IPR000949 -
Tsu02g00439 593 SUPERFAMILY ARID-like 46 131 IPR036431 GO:0003677
Tsu02g00439 593 ProSiteProfiles ARID domain profile. 38 131 IPR001606 GO:0003677
Tsu02g00439 593 SMART ARID_2 35 127 - -
Tsu02g00439 593 MobiDBLite consensus disorder prediction 354 387 - -
Tsu02g00439 593 Gene3D - 27 141 IPR036431 GO:0003677
Tsu02g00439 593 CDD ARID 57 127 - -
Tsu02g00439 593 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 5 593 - -
Tsu02g00439 593 Pfam ARID/BRIGHT DNA binding domain 48 127 IPR001606 GO:0003677
Tsu02g00439 593 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 5 593 - -
Tsu02g00439 593 SMART bright_3 39 132 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00439 Tsu-Chr2 3708100 3711785 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu02g00439 ARID 2.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00439 - - mtr:MTR_1g073530 714.531