Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00438 ATGGGCTGTTGTGCTTCCAAGGAGACTGTGTTGAGTGCTCCACCTGCTTACTATTATTATCCACAAGCATCTGAGGAGCATGTTCCACTATCTTCTCACCAGGGTGCTCCCCCCGCTTTCTCTGGAAGGCTCTTGGTTGATACTAATCTAGATACTTCGAGTCCTGATACTTATAGACCACCTCCTACTCCTCTCCCTTTCAATGTGACATCTGGTGCCACTCAGATTGCACCTGTGGCTCAAGAAATTAGCTGTGACAAGAACAATCCACCCTCGCTTTCTACAAATTCTAATTCAGTTCAAGAACCATCTGGAGATAATCACGGAACCTCACCTAAGTCGGACGAACCGAAGGAATCAGAATGCAAAGGTCAGACTGATTTAGAGCTAGACTCGGCAAAGGATCCTGAAATTGAACTTTCAAAGTTGGGTGAACCTATAAATTTAGAGGAAGAGGAAGATACATGCCCAATATGTTTAGAAGAATATGATGCAGAAAATCCAAAACTCGCCACAAATTGTGACCATCATTTTCACCTTGCTTGCATTCTGGAATGGATGGAAAGAAGTGAATCTTGCCCTGTCTGCGATCAGGTTTCTCCCACTCATTCCCAATTTTCCATCTTACATATTTTTCGATATTTATAA 648 0.429 MGCCASKETVLSAPPAYYYYPQASEEHVPLSSHQGAPPAFSGRLLVDTNLDTSSPDTYRPPPTPLPFNVTSGATQIAPVAQEISCDKNNPPSLSTNSNSVQEPSGDNHGTSPKSDEPKESECKGQTDLELDSAKDPEIELSKLGEPINLEEEEDTCPICLEEYDAENPKLATNCDHHFHLACILEWMERSESCPVCDQVSPTHSQFSILHIFRYL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00438 215 MobiDBLite consensus disorder prediction 109 138 - -
Tsu02g00438 215 MobiDBLite consensus disorder prediction 84 138 - -
Tsu02g00438 215 MobiDBLite consensus disorder prediction 29 70 - -
Tsu02g00438 215 MobiDBLite consensus disorder prediction 84 108 - -
Tsu02g00438 215 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 199 - -
Tsu02g00438 215 ProSiteProfiles Zinc finger RING-type profile. 156 197 IPR001841 -
Tsu02g00438 215 SUPERFAMILY RING/U-box 150 202 - -
Tsu02g00438 215 Pfam Ring finger domain 154 196 IPR001841 -
Tsu02g00438 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 204 IPR013083 -
Tsu02g00438 215 SMART ring_2 156 196 IPR001841 -
Tsu02g00438 215 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 3 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00438 Tsu-Chr2 3699047 3702490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00438 2 198 C3H Transcription Factor Family AT5G41350 51.232 1.24e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00438 - - vra:106765380 313.538