Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00436 ATGTCTTCTCAACTCTATTCTTTTGGCACCACAACTTTCCACACACATTCAACAACCTCAGAACATGTCTCTACTGATGGAAGTGGTGACTTACCATTTTTCTCTGACTCTTTCCCTTTTTTCAACACTGAAGTTACTTCTCAACAAAATTCTAACTCATTATTATTTGATGATTCTCTTATTCCTTCTTCTCTAGACCCTTTTTCACcttcttttttctatttctctccTTCAACTGAcatttttcatcatcaaactaATACTACTAATGGAAGTTTCTCAGCTTTTGATTTATCCGAAGTTAAAAACGAGGAATCACAAATGAGTATTGATTATTATAACAactacaacaataataatagcaCTCAATTTCTTCCTCATAGTTATAGTGGTGTTGAAAATGTATCAAAGTACATGCAAAGAAGCTTTAGTAGTAACTCTTTTGAGAAGAAGCCAAATTTACTATTTCAAACTCACCATGATAATCTCGTTGATTCATCAAAATTTCAAAGGAATGATTTAAGTTCCCCTGAAAATAGTTTGAGAAGGGTTTGTAGCACAGGTGATTTGCAGAACATGAAAGCAAATAACATGTCTCCAACAGAGGGAAATTTGCAAGAGGATCAGAATTTCAAAGTAGGACGTTACAGTgcagaagaaagaaaagaaagaatttcGAAATATAGAGCAAAGAGAACTCAGAGGAACTTTAACAAGACAATTAAGTATGCATGTAGAAAGACATTAGCGGATAATCGACCACGTGTACGGGGCAGATTTGCACGCAACGATGAGCCTAACGAGATTCCTAAGGCTCCATGTTTAATCAGAGATGAAGACGAAGTCAATTTTTGGATGGAAGAATTACGATTGCATGAAGACGATGTAACAGTGGGAGCAGCACAACAATATTTGAAGAATAGTAGTTATGGAGTTAATCAGTTTCAGTATTTTGGCTTATGA 963 0.324 MSSQLYSFGTTTFHTHSTTSEHVSTDGSGDLPFFSDSFPFFNTEVTSQQNSNSLLFDDSLIPSSLDPFSPSFFYFSPSTDIFHHQTNTTNGSFSAFDLSEVKNEESQMSIDYYNNYNNNNSTQFLPHSYSGVENVSKYMQRSFSSNSFEKKPNLLFQTHHDNLVDSSKFQRNDLSSPENSLRRVCSTGDLQNMKANNMSPTEGNLQEDQNFKVGRYSAEERKERISKYRAKRTQRNFNKTIKYACRKTLADNRPRVRGRFARNDEPNEIPKAPCLIRDEDEVNFWMEELRLHEDDVTVGAAQQYLKNSSYGVNQFQYFGL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00436 320 ProSiteProfiles CCT domain profile. 221 263 IPR010402 GO:0005515
Tsu02g00436 320 PANTHER CCT MOTIF FAMILY PROTEIN 28 317 - -
Tsu02g00436 320 Pfam CCT motif 221 263 IPR010402 GO:0005515
Tsu02g00436 320 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 28 317 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00436 Tsu-Chr2 3671875 3673516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00436 217 268 C2C2-CO-like Transcription Factor Family AT5G24930 50.000 5.41e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu02g00436 CCT 6.6e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00436 - - gmx:102665661 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00436 02 3671875 3673516 Tsu02g00436 02 3671875 3673516 ECH
Tsu05g00264 05 1959722 1960649 Tsu02g00436 02 3671875 3673516 PCT