Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00434 ATGGGATTTCCAGTAGGATACACAGAACTTCTCTTCCCAAAATTAGTTCTTCACCTTCTCTCAATCTTCACTTTCATAAGAAAACTCATTTGCATCATTTTTCGCTATCTGGGTCTCCCTGATTTCATAGAACCCGACATTACATGGCCAGAAAATTCGACCCGAATACCCGAATTTGAATCCGTTTCAGCTCTTCTTATCCGTGAAATCTTACCAGTTGTTAAGTTCATGGATTTAGTGGACCCACCTGAAAGCTGTGCTGTATGTCTTACTGAGTTCGAGGAAAACGATGAGATCAGACGGTTAGCGAACTGTAGACACATTTTTCATCGAGGTTGTTTGGACCGTTGGATGGGTTATGATCAAAGAACGTGTCCTTTGTGTAGAACACCTTTTATACCTGATGATATGCAAAGTGCTTTTAATGAAAGATTATGGGCTGCTTCTGGTATACCTGAATTTCACTCTGATGTTCTTGCTTTGTAG 486 0.4033 MGFPVGYTELLFPKLVLHLLSIFTFIRKLICIIFRYLGLPDFIEPDITWPENSTRIPEFESVSALLIREILPVVKFMDLVDPPESCAVCLTEFEENDEIRRLANCRHIFHRGCLDRWMGYDQRTCPLCRTPFIPDDMQSAFNERLWAASGIPEFHSDVLAL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00434 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 136 IPR013083 -
Tsu02g00434 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 157 - -
Tsu02g00434 161 SUPERFAMILY RING/U-box 71 135 - -
Tsu02g00434 161 SMART ring_2 86 128 IPR001841 -
Tsu02g00434 161 Pfam Ring finger domain 85 129 IPR001841 -
Tsu02g00434 161 ProSiteProfiles Zinc finger RING-type profile. 86 129 IPR001841 -
Tsu02g00434 161 PANTHER BRH1 RING FINGER PROTEIN 1 157 - -
Tsu02g00434 161 CDD RING-H2 86 129 - -
Tsu02g00434 161 SMART ringv_2 85 129 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00434 Tsu-Chr2 3661310 3662526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00434 1 150 C3H Transcription Factor Family AT1G63840 58.710 5.45e-60 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00434 K16281 - rcu:8287413 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00434 02 3661310 3662526 Tsu02g00434 02 3661310 3662526 ECH
Tsu05g00263 05 1955630 1956482 Tsu02g00434 02 3661310 3662526 PCT