Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00430 atggatgtgttattgttattattagctCTATTGGTTGCTTTTCCAAGCTTGACGACAGTCGAGAGCCGAAAAACACGGGTTCTAGACTATTTTGAGTACTGTGCTGTGAGCTGTAGAGCTTACAGTGCCTCAGTGACAGAATTTGGAGCGGTCGGTGATGGACAAACTTCGAACACTCAAGCCTTTCAGAAAGCCATTGATCATTTGAGTCAGTACTCATCAAATGGTGGCTCTCAACTTTATGTTCCACCAGGAAGATGGTTAACTGGTAGTTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAAGATGCTGTAATTCTTGGCTCTCAGGATGAAAGTGAGTGGCCAGTGATTGATCCCTTGCCGTCATATGGTAGAGGGAGGGACACTCAAGGTGGAAGGTATAGCAGTCTAATTTTCGGAACCAACCTCACCGATGTTATCATAACAGGGGACAATGGTACATTAGATGGACAAGGTGAAGTTTGGTGGCAAAAGTTCCATAAGGGGGAGCTCACTTATACTAGGCCTTACCTGATTGAAATCATGTACTCGAATAGTATTCAGATATCCAATCTCACTTTGGTTAATTCTCCATCTTGGAATGTTCATCCTGTTTACAGCAGCAACATTATTGTTCAAGGCATCACGATTCTTGCTCCCGTGAATTCACCAAACACAGACGGGATAAACCCTGACTCTTGCACAAACACGCGGATTGAGGACTGTTATATAGTGTCCGGAGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACTAAGCAGCTGGTAATAAGAAGACTCACTTGTATTTCTCCAACCAGTGCTGTGATTGCTTTAGGGAGTGAAATGTCCGGTGGAATTGAAGATGTAAGGGCGGAGGACATTTTGGCGATCAACTCAGAATCGGGAGTCAGGATCAAAACTGCTGTTGGAAGAGGAGGATATGTCAGGGACATATATGTTAGAAGGATGACTATGCAAACCATGAAATGGGCATTTTGGATGACAGGAGACTATGGTTCTCATGCTGATAACAACTATGATCCTAATGCAATTCCTGTGGTTCAGAATATTAATTATCGCGATATGATTGCTGATAATGTGACTATGGCTGCAAAGTTAGAGGGTATATCTAATGCTCCATTTACTGGAATCTGCATATCCAATGTAACCATTGGATTAGCCAAGAAGGCTAAAAAAGTTCCGTGGAATTGCACTGATATTGCTGGAATTTCAAGTGGCGTGACTCCTGTGCCATGTGGCCTATTGCCAGACCAAGGAGTAGAGAATATTGGGGCATGCACCTTCCCAGAATACAAATTGCCCATCGAAGATGTCGAGGTTCGAACATGTACTTATAGAAGGAATAGAAGGAATTTGTGA 1419 0.4242 MDVLLLLLALLVAFPSLTTVESRKTRVLDYFEYCAVSCRAYSASVTEFGAVGDGQTSNTQAFQKAIDHLSQYSSNGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILGSQDESEWPVIDPLPSYGRGRDTQGGRYSSLIFGTNLTDVIITGDNGTLDGQGEVWWQKFHKGELTYTRPYLIEIMYSNSIQISNLTLVNSPSWNVHPVYSSNIIVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVRIKTAVGRGGYVRDIYVRRMTMQTMKWAFWMTGDYGSHADNNYDPNAIPVVQNINYRDMIADNVTMAAKLEGISNAPFTGICISNVTIGLAKKAKKVPWNCTDIAGISSGVTPVPCGLLPDQGVENIGACTFPEYKLPIEDVEVRTCTYRRNRRNL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00430 472 Pfam Pectate lyase superfamily protein 44 100 IPR024535 -
Tsu02g00430 472 SUPERFAMILY Pectin lyase-like 33 465 IPR011050 -
Tsu02g00430 472 PANTHER PECTIN LYASE-RELATED 5 467 - -
Tsu02g00430 472 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 5 467 - -
Tsu02g00430 472 Gene3D - 32 424 IPR012334 -
Tsu02g00430 472 Pfam Glycosyl hydrolases family 28 136 412 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00430 Tsu-Chr2 3596630 3598445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00430 31 472 Glycoside Hydrolase AT4G23500 73.756 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00430 - - gmx:100785841 847.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00430 02 3596630 3598445 Tsu02g00430 02 3596630 3598445 ECH
Tsu02g00430 02 3596630 3598445 Tsu08g00814 08 8781444 8784115 ECH