Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00427 ATGGGTCACCATTCTTGCTGCAATCAACAGAAGGTTAAGAGAGGTCTTTGGTCCccagaagaagatgaaaaactcATCACTTACATTACTACTCATGGCTATGGTTGTTGGAGTGAAGTTCCTGACAAAGCTgGGCTTCAAAGGTGTGGTAAGAGTTGTAGATTGAGATGGATAAATTATTTGAGACCTGATATTAGAAGAGGAAGGTTTACACCTGATGAGGAGAAGTTAATTATCAGTCTTCACAACGTTGTAGGCAACAGATGGGCTCACATTGCAAGTCACTTACCTGGTAGAACGGACAATGAAATAAAGAACTACTGGAATTCATGgatcaaaaagaaaatcagaAAACATAATTCAGCCTCTAATTCTTCTTCAACCATCACCAATATTAATACACAAAATCATGTTCTTGATTTCAGTTCCAATAATATTAAACTAAGCCACTTTTCCAACCAAGATCAGAATGTAACATCAGCAAAACCAATATCATCATTTCAAGAAAGTACAACTTTGTTTTCTCCCACATGCCCTTTATTTATGTTTGAGCCAAATTCATTACTACATGGAAGTGCAACAACAGAAGGTactaataataatcataatctGCAAACAGATCAATACTTTCAAGATTCTGTTAGTTTGATGAATTCTGAAACATGGAATCAAGTCCAATCATCTGTATCAGTATCACTACCTCCTCCAATATCATCAACAACTTCTTTTTCAATGGATACAATGAATATTAATTATCTACCACCTTTGATAGAGAATGTGGAAAACATGGAAGAAGAATCATGCTTTGATCAGAGGCAAGAGATGAATAACATCAATGATCAATGGCAACAACAATGtcctaataataatagtaacttTATTTTCTGGGACAATATGGTTCATGGAAATGATGAACTTGGTGGGGAAGAACAACTAGcaccaaattcatcaaatatgGGAACAAACACTATTACACTTTCTCCTTTTCCTTCTTCATCTTTTTGa 1005 0.3244 MGHHSCCNQQKVKRGLWSPEEDEKLITYITTHGYGCWSEVPDKAGLQRCGKSCRLRWINYLRPDIRRGRFTPDEEKLIISLHNVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKHNSASNSSSTITNINTQNHVLDFSSNNIKLSHFSNQDQNVTSAKPISSFQESTTLFSPTCPLFMFEPNSLLHGSATTEGTNNNHNLQTDQYFQDSVSLMNSETWNQVQSSVSVSLPPPISSTTSFSMDTMNINYLPPLIENVENMEEESCFDQRQEMNNINDQWQQQCPNNNSNFIFWDNMVHGNDELGGEEQLAPNSSNMGTNTITLSPFPSSSF 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00427 334 CDD SANT 69 112 IPR001005 -
Tsu02g00427 334 Gene3D - 6 66 - -
Tsu02g00427 334 MobiDBLite consensus disorder prediction 310 334 - -
Tsu02g00427 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu02g00427 334 CDD SANT 17 61 IPR001005 -
Tsu02g00427 334 MobiDBLite consensus disorder prediction 306 334 - -
Tsu02g00427 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu02g00427 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu02g00427 334 Gene3D - 68 138 - -
Tsu02g00427 334 PANTHER MYB TRANSCRIPTION FACTOR 1 332 - -
Tsu02g00427 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu02g00427 334 PANTHER MYB DOMAIN PROTEIN 55 1 332 - -
Tsu02g00427 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu02g00427 334 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu02g00427 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu02g00427 334 SMART sant 66 114 IPR001005 -
Tsu02g00427 334 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00427 Tsu-Chr2 3584422 3586389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00427 1 310 MYB Transcription Factor Family AT1G63910 47.139 1.94e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g00427 Myb_DNA-binding 2.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00427 K09422 - gmx:100797787 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00427 02 3584422 3586389 Tsu02g00427 02 3584422 3586389 ECH