Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00418 ATGGATGAGCTTGCATTTTTAATGGATTGGGATTTGGAAGCTATCAATGAATTAGCCCCAACAACAAATAATccttatttttctcatttattttcTGAACAAGATGATGAGTTATTATTTGGAAGTTTTCCTGAATTCTCAAAAACCAAAAATGCCCttattgatgaatttgaagaactTTGTAAACCTTGCTACCCTCTTTCATCTCAATCCATCGTTTCAAGTTCTCTTACTACTGTTGTCCCTAAAGAGCCTCATGATGAAGTCAATGAAATTAAAGCGTCAAAGAAAGTAGCTTCTCAAGATTTTCAAGTTCCTGCAGTACCTAAATGTAAAAAAAGcaagaaaaacaagaacaagagtATTGTGAAGAAAGTAACAGCAGTAGATGGTACTCTTTGTGATGCATGGGCATGGCGAAAATATGGACAAAAACCGATAAAGGGTTCGCCTTATCCACGAAGTTACTATAGATGCAGCAGTTCCAAAGGATGTTTGGCAAGAAAACAAGTTGAAAAGAATCATTTGGATCCAAAAGTTTATATAGTTACATACACTGCAGAACACAATCATCCTCAACCAACTAGAAGAAACTCATTAGCTGGAAGCACTAGAAAGAACAATCTATTGGTTGCACATTCTTCAACTCGTGCCCAAAAAACTTGTTCTATAAATTCCTTAGTAGAAACTCACTCTCCAAACACACCTTTGGTGAAAATTGAAGATGAGGTAAGTATGCAACAACAAAGTAATGGAATATTGGAGGATGTAGAagatcatcatcttcttgagtGGTTGGATGGTTCTCAATTATGTGATGATAGTTGGATTCCATGTAAAGAGCTAGAGGAATTTATTGGACTAGATAATATGTACCTATAA 882 0.3254 MDELAFLMDWDLEAINELAPTTNNPYFSHLFSEQDDELLFGSFPEFSKTKNALIDEFEELCKPCYPLSSQSIVSSSLTTVVPKEPHDEVNEIKASKKVASQDFQVPAVPKCKKSKKNKNKSIVKKVTAVDGTLCDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVEKNHLDPKVYIVTYTAEHNHPQPTRRNSLAGSTRKNNLLVAHSSTRAQKTCSINSLVETHSPNTPLVKIEDEVSMQQQSNGILEDVEDHHLLEWLDGSQLCDDSWIPCKELEEFIGLDNMYL 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00418 293 Gene3D WRKY domain 110 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g00418 293 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 9 252 IPR044810 GO:0003700
Tsu02g00418 293 SUPERFAMILY WRKY DNA-binding domain 132 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu02g00418 293 Pfam WRKY DNA -binding domain 135 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g00418 293 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 9 252 - -
Tsu02g00418 293 ProSiteProfiles WRKY domain profile. 128 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu02g00418 293 SMART WRKY_cls 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00418 Tsu-Chr2 3518224 3519725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00418 1 273 WRKY Transcription Factor Family AT4G23550 38.966 5.00e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu02g00418 WRKY 1.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00418 K13426 K13425 gmx:102663255 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00418 02 3518224 3519725 Tsu02g00418 02 3518224 3519725 ECH
Tsu02g00418 02 3518224 3519725 Tsu01g04366 01 51539058 51540246 ECH
Tsu02g00418 02 3518224 3519725 Tsu08g01015 08 11149739 11151202 ECH
Tsu02g00418 02 3518224 3519725 Tsu04g02079 04 22908995 22910709 ECH