Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00405 ATGGGTAGCAACTGCAGCACCGGCACCGGTACCGGTATCACCACCACCTACTCCGATCATCCACCTCAAAACCTCCCCAAAATCCTCCCACAAAACTCCACTCCTTCACCCCCTCAACCTCCCTTATCCACCACCCTCGGCCGCATCCTCGGCCGTCCCATGCAAGACGTCCGCTCCATCTTCATCTTCGGCCGTGAACTCGGCCGTGGACAATTCGGCGTTACTTATTTAGTAACCCACAAAGTCACGAAAGAACAATTCGCTTGCAAATCAATCGCTACACGAAAACTCATAAACCgtgatgatattgatgatgtTCGCCGTGAAGTTCAAATCATGCACCATCTCACCGGCCACCGTAACATTGTTGAACTCAAAGGTGCTTATGAGGATAAACACTCTGTTAACCTTGTAATGGAGCTTTGTGCCGGCGGTGAGCTTTTTGATCGGATTATTACTAAAGGACATTACTCTGAACGTGCTGCTGCTAATCTTTGCCGTCAGATTGTTACTGTGGTTCATAACTGTCATACTATGGGAGTTATGCACAGAGACTTGAAGCCTGAGAATTTCTTGTTCCTTGGTAAAGATGAGAATTCGCCTCTTAAGGCTACGGATTTTGGTCTCTCTGTGTTTTTCAAATCAGGAGATGTGTTTAAAGATCTTGTTGGGAGTGCCTATTACGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGGCCTGAAACTGATATTTGGAGTGCCGGGATTATATTATACATTCTGCTTTCTGGTGTACCCCCCTTCTGGGCAGaaaatgaaaagggtATCTTTGATGCTATTCTTCGTGGACATATTGATTTTGCGTCTGCTCCCTGGCCTTCTATATCAAGTAGTGCCAAAGACCTGGTCAAGAAGATGCTACGAGAAGACCCCAAAGAACGGCTTTCAGCAGTTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGATATTGCTGTTTTAAGCAGAATGAAACAATTCCGAGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGgtTATCGCCGAAAacctttctgaagaagaaattATTGGCTTGAAAGAAATGTTCAAATCCATGGATACAGACGACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCTAAACTCGGCAGTAAAATGTCCGAATCGGAAGTAAGGCAGTTGATGGAAGCGGCCGATGTGGACGGCAATGGAACCATTGATTATATTGAATTTATAACCGCCACTATGCATATGAATAGAATGGAAAGAGAGGATCACCTATATAAAGCCTTTGAATATTTTGACCAAGATAAGAGCGGGTACATCACAAAGGAAGAGTTGGAATCTGCCCTTAAGAAGTATAATATGGGTGATGAGAATACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGATAGAATTAACTATGATGAGTTTGTAGCTATGATGAGAAAAGGAAACCCAGATATAATAACCCACAGACGTCGCAAATAA 1539 0.423 MGSNCSTGTGTGITTTYSDHPPQNLPKILPQNSTPSPPQPPLSTTLGRILGRPMQDVRSIFIFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDKHSVNLVMELCAGGELFDRIITKGHYSERAAANLCRQIVTVVHNCHTMGVMHRDLKPENFLFLGKDENSPLKATDFGLSVFFKSGDVFKDLVGSAYYVAPEVLRRSYGPETDIWSAGIILYILLSGVPPFWAENEKGIFDAILRGHIDFASAPWPSISSSAKDLVKKMLREDPKERLSAVEVLNHPWMRVDGDASDKPLDIAVLSRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDDSGTITFEELKAGLPKLGSKMSESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEREDHLYKAFEYFDQDKSGYITKEELESALKKYNMGDENTIKEIIAEVDTDNDDRINYDEFVAMMRKGNPDIITHRRRK 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00405 512 SUPERFAMILY EF-hand 358 499 IPR011992 -
Tsu02g00405 512 MobiDBLite consensus disorder prediction 1 47 - -
Tsu02g00405 512 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00405 512 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00405 512 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 504 - -
Tsu02g00405 512 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Tsu02g00405 512 MobiDBLite consensus disorder prediction 1 30 - -
Tsu02g00405 512 Pfam EF-hand domain pair 367 427 IPR002048 GO:0005509
Tsu02g00405 512 Pfam EF-hand domain pair 437 499 IPR002048 GO:0005509
Tsu02g00405 512 ProSiteProfiles EF-hand calcium-binding domain profile. 470 504 IPR002048 GO:0005509
Tsu02g00405 512 Pfam Protein kinase domain 64 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g00405 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Tsu02g00405 512 SUPERFAMILY Protein kinase-like (PK-like) 61 320 IPR011009 -
Tsu02g00405 512 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Tsu02g00405 512 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Tsu02g00405 512 Gene3D - 327 502 - -
Tsu02g00405 512 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Tsu02g00405 512 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Tsu02g00405 512 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 15 23 504 - -
Tsu02g00405 512 SMART efh_1 473 501 IPR002048 GO:0005509
Tsu02g00405 512 SMART efh_1 402 430 IPR002048 GO:0005509
Tsu02g00405 512 SMART efh_1 366 394 IPR002048 GO:0005509
Tsu02g00405 512 SMART efh_1 438 466 IPR002048 GO:0005509
Tsu02g00405 512 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Tsu02g00405 512 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Tsu02g00405 512 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
Tsu02g00405 512 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Tsu02g00405 512 Gene3D Transferase(Phosphotransferase) domain 1 147 326 - -
Tsu02g00405 512 CDD STKc_CAMK 61 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00405 Tsu-Chr2 3389380 3393934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00405 47 511 EF-hand Containing Proteins AT4G23650 79.570 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu02g00405 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00405 K13412 - gmx:100777096 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00405 02 3389380 3393934 Tsu02g00405 02 3389380 3393934 ECH
Tsu05g00246 05 1803861 1808612 Tsu02g00405 02 3389380 3393934 PCT