Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00393 ATGAACAATCTCTATCCCAAAACTGTACGAATACTTCTCACCGACAATGACGCAACCGACTCTTCTTCCGACGATGAACTTCAACCACTCCGCCGTGTCAAAACCTTCgtcaacaaaatcacaatcgaaaaacaaaacaaaaacaacagcATTACCAAGAAAAAAACTTCTAAAAAATCTCCGGCGACTCAACGGCGGCCGGTGATTTACTCCGGGAAGAAATACCGTGGAGTGAGACAGAGACCATGGGGGAAATGGTCTGCGGAGATACGAGATCCTAAAATGCGTATTCGACGGTGGTTGGGAACTTATAACACTGCTGAAGAAGCTGCTATGGAATATGATAAAGCTGCAATTGAAATTCGTGGCGCAGACGCGCTTACGAATTTTATTCAACCGATTGGGAAGAAGATTATAAACTCCAGCGAACAATGTTTGAGTAACAACGTTGTTTCTGCTACTTCAGTACTTAATCAATGTTCTACTTGTTCTTCAGAAGGTGGTGAATCTGTTATAGTAAAAGATAATGTTGTTGTAGacaatgttgttgttgatgttccAACAAATGATTCAAATGAATGTTCCTCTGTTTCAGGGAATTTGTTTGTAGAAGATGATAATAAGTTTAAGTTTGAGTCAGTTTTTCCAATTTCTAGTGTTACTTTGTTTGATGAGTTTGGAAGAAATGATGATAATGAGACAGAGTTGGAAAACATGTTCTTAGTCCCTGATGACGATGATTTTAATGGAAATTTTGTTGATACTTTGAATCAGAGTTTGAATTTGGATTCAACAGATTGGAATAGAGATTATACTAATTTTCAGGATATAGAGGATTTCTTTGGTTCGGGTCATGTTACTGTTGTTTGA 870 0.354 MNNLYPKTVRILLTDNDATDSSSDDELQPLRRVKTFVNKITIEKQNKNNSITKKKTSKKSPATQRRPVIYSGKKYRGVRQRPWGKWSAEIRDPKMRIRRWLGTYNTAEEAAMEYDKAAIEIRGADALTNFIQPIGKKIINSSEQCLSNNVVSATSVLNQCSTCSSEGGESVIVKDNVVVDNVVVDVPTNDSNECSSVSGNLFVEDDNKFKFESVFPISSVTLFDEFGRNDDNETELENMFLVPDDDDFNGNFVDTLNQSLNLDSTDWNRDYTNFQDIEDFFGSGHVTVV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00393 289 Gene3D AP2/ERF domain 73 132 IPR036955 GO:0003700|GO:0006355
Tsu02g00393 289 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 283 - -
Tsu02g00393 289 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Tsu02g00393 289 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Tsu02g00393 289 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
Tsu02g00393 289 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 6 283 - -
Tsu02g00393 289 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Tsu02g00393 289 SUPERFAMILY DNA-binding domain 74 131 IPR016177 GO:0003677
Tsu02g00393 289 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Tsu02g00393 289 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Tsu02g00393 289 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00393 Tsu-Chr2 3245038 3245907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00393 7 172 AP2-EREBP Transcription Factor Family AT4G27950 46.316 7.62e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g00393 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00393 - - mtr:MTR_8g099215 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00393 02 3245038 3245907 Tsu02g00393 02 3245038 3245907 ECH
Tsu05g00236 05 1729903 1731363 Tsu02g00393 02 3245038 3245907 PCT