Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00384 ATGGCTGACGTAGTTGCTGAAATCCCCACCAAGAAATCAAGAGGATCAAGAAAGGCTCTCAAGGAGAAAGCCTCATCAACCAATGATGCCAACATCGTAGCCAACGAGTCAACAATTTCACCCCTTTCTGATCAGCCCAAGAAAGGAAAAGCTGCATCAAAGAAAcaacaaccaaaacaacaaTCTTTCGAGCAAGATTTGCTCGAGATGCAGGAAAAGATGGAGCAGTTGCGTCTCGAGAAGGAGAAGACCGAAGAGTTGTTGAAAGCCAAAGATGAGATCTTGAAACAAAAGGATGAAGAAATCGAAAATCGTGGTAAGGAACAGGAGAAACTTCAAGTTGAGCTTAAGAAATTGCAGAAGTTGAAAGAATTCAAACCCACCATGAATTTGCCTATGGTGAAAGAcaaggaagaaaagaaagacaAGAAGAAGAATGCATGCCCCGAGAAAAAGAGGCCTACTCCAGCCTACATGTTATGGGTCAAAGACCAATGGCATGAGGTTAAGAAGGAGAATCCAGAGGCAGAATTTAAGGACATTTCAAACATGCTTGGTGCTAAATGGAAGACAGTTAGTGCAGAAGAGAAGAAGCCTTATGAGGAGAAATACCATGCTGAAAAAGAAGCTTATTTGCAAGTAATTACAAAGGAAAAACGTGAGATTGAGGCAATGAAACTCTTGGAAGAAGAACAGAAGCAAAAGACTGCTATGGAATTGCTTGAACAGTATATGCAATTCAAACAAGAGACAGAAAAAGAGAACaagaagaataagaaagaaAAGGATCCATTGAAACCAAAGCATCCTTTGTCAGCTTATTTCTTGTTTACTAATGATAGGAGAGCAGCTATTCGTGCCGACAACAAGGGTATCACGGAGGTTTCCAAGATCACCTCTGAAGAGTGGAAAAACATGACTGAAGAACAGAAGAGGCCCTATGAAGAGATGGCAAAGAAGAACAAAGAGAAATATGCTGAAGAAATGGAAGCTTACAAACAGAAGAAAGAAGAGGAGGCTGCAAATCTGATGaaggaagaggaagaacataTGAAACTTCAGAAACATGAAGCCTTGCAATTGctcaagaaaaaggaaaaaactgaAAACATGATCAAGGAAACAAAACTGAATCGTCAGATGAAGAAACAACATAGCAAGGAAGATAAGAACTCTGATCCAAACAAGCCTAAAAGACCTCCATCCTCATATATTCTATTCACCAAAGAAGCAAGGAAGAACATATTGGAGGAACGTCCAGGACTTGGTGCAAACATGCTGAAAACACTTGTTTCATTGAAGTGGAAGGATATGAGTGAGGAAGATAAACAAGTGTGGAATGGAAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAATTGGAGGAATACAACAAATCAATCGCTGCAAAGCTGGACCAGAAAACAGATGAAGAATAA 1440 0.3771 MADVVAEIPTKKSRGSRKALKEKASSTNDANIVANESTISPLSDQPKKGKAASKKQQPKQQSFEQDLLEMQEKMEQLRLEKEKTEELLKAKDEILKQKDEEIENRGKEQEKLQVELKKLQKLKEFKPTMNLPMVKDKEEKKDKKKNACPEKKRPTPAYMLWVKDQWHEVKKENPEAEFKDISNMLGAKWKTVSAEEKKPYEEKYHAEKEAYLQVITKEKREIEAMKLLEEEQKQKTAMELLEQYMQFKQETEKENKKNKKEKDPLKPKHPLSAYFLFTNDRRAAIRADNKGITEVSKITSEEWKNMTEEQKRPYEEMAKKNKEKYAEEMEAYKQKKEEEAANLMKEEEEHMKLQKHEALQLLKKKEKTENMIKETKLNRQMKKQHSKEDKNSDPNKPKRPPSSYILFTKEARKNILEERPGLGANMLKTLVSLKWKDMSEEDKQVWNGKASEAMDAYKKELEEYNKSIAAKLDQKTDEE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00384 479 SUPERFAMILY HMG-box 139 213 IPR036910 -
Tsu02g00384 479 CDD HMGB-UBF_HMG-box 152 215 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 127 152 - -
Tsu02g00384 479 Coils Coil 60 122 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 361 396 - -
Tsu02g00384 479 Gene3D High mobility group box domain 250 345 IPR036910 -
Tsu02g00384 479 Gene3D High mobility group box domain 379 477 IPR036910 -
Tsu02g00384 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 397 465 IPR009071 -
Tsu02g00384 479 Coils Coil 315 356 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 127 151 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 10 24 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 246 273 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 246 268 - -
Tsu02g00384 479 SUPERFAMILY HMG-box 254 340 IPR036910 -
Tsu02g00384 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 474 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 25 44 - -
Tsu02g00384 479 Gene3D High mobility group box domain 147 227 IPR036910 -
Tsu02g00384 479 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 6 474 IPR044601 GO:0003677
Tsu02g00384 479 Coils Coil 358 378 - -
Tsu02g00384 479 CDD HMG-box 397 462 - -
Tsu02g00384 479 SMART hmgende2 266 334 IPR009071 -
Tsu02g00384 479 SMART hmgende2 396 466 IPR009071 -
Tsu02g00384 479 SMART hmgende2 150 220 IPR009071 -
Tsu02g00384 479 Coils Coil 447 478 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 361 405 - -
Tsu02g00384 479 MobiDBLite consensus disorder prediction 1 73 - -
Tsu02g00384 479 CDD HMGB-UBF_HMG-box 267 330 - -
Tsu02g00384 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 267 333 IPR009071 -
Tsu02g00384 479 Coils Coil 215 261 - -
Tsu02g00384 479 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 151 219 IPR009071 -
Tsu02g00384 479 Pfam HMG (high mobility group) box 152 213 IPR009071 -
Tsu02g00384 479 Pfam HMG (high mobility group) box 267 333 IPR009071 -
Tsu02g00384 479 Pfam HMG (high mobility group) box 397 465 IPR009071 -
Tsu02g00384 479 SUPERFAMILY HMG-box 394 469 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu02g00384 HMG_box 1.7e-15 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00384 K09273 - gmx:100783033 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00384 02 3198954 3201538 Tsu02g00384 02 3198954 3201538 ECH