Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00369 ATGGCTACTCAGTCATCTGTAAtttccatcttcttcatcatcttcatctcaATAACAAAAAGTCAAGAATTCACATGTAAAACAACATCATGTGAAACCTTTGGACTTCCAATTCAGTTTCCATTTTCATTAAACCaatcaaaccaaacaaatcttTGTACTTACCCAGGTTTCCAACTCACATGTAGCAATAACACAACCATCTTCAGCGAACCATTACTCACTCTCTCAAATTCCGAACCCTTTGTTGTAAAACAAATCTCTTTAAAAGACCAAACAGTTTTGGTCAACGATCCAAACAACTGTCTCCCACAACGTTTCATGTTTGATCATGATAATAACTTCATGTTAAACCTTAAAGATTCACCGTTTCGGTTgggttattattataattttgttaattattcGTTCCTAAATTGTCCTTCAAATACAAGGGACTTATCTACGGTACCACGTATAAGTTGTTTGAATTTAAGCTCTTATGAAAAAGACAAGAAAGTGAATTATTCGGTTGTGGCTATGCTGTCTGATACTTTATCTGGTGCACCGTGGAAAGCACCATCGCCATTGTGTGAGTTTATTTCATCGGCTATGATACCTGTACATGTTGAAGATAATTCGTTATTTTGGAGAGATTATTATTCTGATATACGGTTGCAGTGGGATCATCCTGATTGTCGATATTGTGAATATCGTGGAGGAAGATGTGGATTGGCTGGAGTTCATGATCTTATTAGCGTTGCTTGTTATGATCTTCCCACCACCAAAGGCCTATCGAAGAAAGTCAAGTATGGTTTAAGTCTAGGTCTAGGAATACCTGGATTCTTAGGTATTATTGTGTTTACATGTATGTTATGGTACGAGAAGAACACAACTAATAATCAGCTACATCGTCAAAGAGACACTGAATTATCTACCATGATAGTGCCACACCCCCCAATTGTAGTTATGGGCCTTGATGGGCCAGCAATAGAAAGATATCCTAAAATCCAACTTGGTGAAAGTGGACGAGTGCCAAGGCCCAATGACAATATTTGCTCAATATGTCTTTGTGAGTACCAACCAAATGAAGTATTGAGGACTATCCCAGAATGTGATCACTATTTTCATGTGAATTGTATAGATGGATGGCTCAAGAGTAATGCTACTTGCCCTTTGTGTAGAAATTTTCCAGAGAGATCTACTTCATTTCCTTCTTTTTTGCCTGTATCACCAActtcttaa 1224 0.3538 MATQSSVISIFFIIFISITKSQEFTCKTTSCETFGLPIQFPFSLNQSNQTNLCTYPGFQLTCSNNTTIFSEPLLTLSNSEPFVVKQISLKDQTVLVNDPNNCLPQRFMFDHDNNFMLNLKDSPFRLGYYYNFVNYSFLNCPSNTRDLSTVPRISCLNLSSYEKDKKVNYSVVAMLSDTLSGAPWKAPSPLCEFISSAMIPVHVEDNSLFWRDYYSDIRLQWDHPDCRYCEYRGGRCGLAGVHDLISVACYDLPTTKGLSKKVKYGLSLGLGIPGFLGIIVFTCMLWYEKNTTNNQLHRQRDTELSTMIVPHPPIVVMGLDGPAIERYPKIQLGESGRVPRPNDNICSICLCEYQPNEVLRTIPECDHYFHVNCIDGWLKSNATCPLCRNFPERSTSFPSFLPVSPTS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00369 407 Pfam Wall-associated receptor kinase galacturonan-binding 26 98 IPR025287 GO:0030247
Tsu02g00369 407 SUPERFAMILY RING/U-box 341 390 - -
Tsu02g00369 407 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 3 399 - -
Tsu02g00369 407 ProSiteProfiles Zinc finger RING-type profile. 346 388 IPR001841 -
Tsu02g00369 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 392 IPR013083 -
Tsu02g00369 407 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 399 - -
Tsu02g00369 407 SMART ring_2 346 387 IPR001841 -
Tsu02g00369 407 Pfam Ring finger domain 345 388 IPR001841 -
Tsu02g00369 407 CDD RING-H2_PA-TM-RING 346 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00369 Tsu-Chr2 3087496 3092549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00369 26 391 C3H Transcription Factor Family AT2G46495 33.154 3.82e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00369 - - mtr:MTR_8g099495 549.666