Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00367 ATGTCTTCCACAACTCTAATAACTGTATTTTATGTCTTTATTATTTTCCAACTTCAAACTTCTAAAGCCAAACAAATAATCTGCAAAGCCTTATCATGTGGTGACATAGAGATTGCTTTTCCTTTTGGGTTAAAAGAAGCTAATCAAGATCCTCTTTGTAGCTATTTACCAAATCCAACTTTCCAACTTTCTTGTAACAACCAAAGCCAAACAATCCTCAATCTccccaaaacaaaaaacttaatCATTACAAACATCAATTACAAGTCCCAAACAATCCAAGTCAACGACCCCGAAGGATGTCTCCCAAAACGTTACTTAAACAACAATTTTAACCTTTCAGGTTCATCTTTTAAATTATACCCCGAAATTTACAACACTAATGGTGATAACCTCACTTTCATTCGTTGTCCTTCCAGCGTTATTACcgattcatcatcatcatcatctcaaTTTCCATTAGCACCAATTTCTTGTTTAAGCAACGTTGAAGAACATTCGAACTTGTCTTCCTCTTCGGTTATAGTTTCATGGGTACCGACTAAATCTGTCGATACAACGTTGTTTGAAACATGTGAGGTGATTTCAACGGCTCTTGTTCCGTTACCATGGATGGATATGACTATGTGGCCATTTTTGCCTGATCTTAATAGTGATGTTGAATTGATGTGGAATGAACCTAGATGTGGGAATTGTGCACTTCATGATCAAGTTTGTGGATTCTCTGAGGATCAAAATATGGTTCAAGTTCAATGTTTCGCTAATTCTTCTAACCAAGGTCTATTAAAAAGTGCCAAATATGGCATTGCTTTAGGAGTGGGAATACCTGCACTTTTATTAATTGGCTTAGCATGCTTCTGTGGTAAGAGAACCCCACTTCAAGGACAAAGAAACTCATCAAATGTTCCTACAATAACAATTTCCTTAGAACCACTCCCTTCATTTGTAATGGGTCTTGATGGTGCCACAATTGAAAAGTATCCCAAAATTCTTTTAGGGGAAAGTGGACGTTTATTGAAGCCTAATGACAAtacttgttcaatttgtttatcTGAATATCAACCTAAAGAGACATTGAGAAGCATCCCTGAATGTAACCATTATTTTCATGCTGCTTGTATTGATGAATGGCTCAAAATGAATGGTTCACCTTTTAGGTTAAGCCTCGAAATTTACAATCTTAACTTCACTTTGCTTCGTTGTCCTTCCAATGTTACTActgattcttcttcatcatcatcatcatcgtcgttTCAATTTCCATTAACACCAATTCCTTGTTTAAGCAACGATGAAAAATATTCGAACTtgtcttcctcttcttcttcggTTATAGTTTTATTATGGGCACCACCTTTTGCGAATACAACGTTGATTGAAACGTGTGAGGTGATTTCAACGGCTTTTGTTCCGTTACCGTGGAACTGGAAGGATGTGAATATGTGGCCATTTTGGCGTGATATTAACAGTGATGTTGAGTTGGTGTGGACTAATCCTAGATGTGGTAAGTGTGCACTTAATGGTCAAGTTTGTGGGTTCTCTGaggattttaaaaataatcttcAAGTTGAATGTTTTGAAAGTCCCTCCAATGAAGAAGatgacatatatatacatgacaTAGGTCTCTCAAGAAGTGCCAAATATGGTATGGCAATAGGAGTGGGAATACCTGCACTTGTATGTCTAATTGGCTTTACTTGCTTCTGTTGTGGTAAGATGAGAACAACCTCACTTGATGGACAAAGAACCTCATCAAATGTTCCTACACCGACAATTTCCTTAGAATCACTCCCTTCATATGTAATGGGTCTTGATGGTGCCACGATTGAAAAGTATCCCAAAACTCTTATTGGAGAAAGTGGACGTTTATTAAAGCCTAATGACAATACTTGCTCAATTTGTTTATCTGAATATCAACCTAAAGAGACATTGAGAAGCATTCCTGAATGTAACCATTATTTTCATGCTGCTTGTATTGATGAGTGGCTCAAAATGAATGGTACATGCCCCATATGTAGGAACTCTCCGGAGGCATATTCTTCGTCGGGTCCTTATTTTGCTTCGCTATTGCTATCCCCAAACTCGTCATCATTGTCCACTTCACGATAG 2112 0.349 MSSTTLITVFYVFIIFQLQTSKAKQIICKALSCGDIEIAFPFGLKEANQDPLCSYLPNPTFQLSCNNQSQTILNLPKTKNLIITNINYKSQTIQVNDPEGCLPKRYLNNNFNLSGSSFKLYPEIYNTNGDNLTFIRCPSSVITDSSSSSSQFPLAPISCLSNVEEHSNLSSSSVIVSWVPTKSVDTTLFETCEVISTALVPLPWMDMTMWPFLPDLNSDVELMWNEPRCGNCALHDQVCGFSEDQNMVQVQCFANSSNQGLLKSAKYGIALGVGIPALLLIGLACFCGKRTPLQGQRNSSNVPTITISLEPLPSFVMGLDGATIEKYPKILLGESGRLLKPNDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGSPFRLSLEIYNLNFTLLRCPSNVTTDSSSSSSSSSFQFPLTPIPCLSNDEKYSNLSSSSSSVIVLLWAPPFANTTLIETCEVISTAFVPLPWNWKDVNMWPFWRDINSDVELVWTNPRCGKCALNGQVCGFSEDFKNNLQVECFESPSNEEDDIYIHDIGLSRSAKYGMAIGVGIPALVCLIGFTCFCCGKMRTTSLDGQRTSSNVPTPTISLESLPSYVMGLDGATIEKYPKTLIGESGRLLKPNDNTCSICLSEYQPKETLRSIPECNHYFHAACIDEWLKMNGTCPICRNSPEAYSSSGPYFASLLLSPNSSSLSTSR 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00367 703 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 383 703 - -
Tsu02g00367 703 ProSiteProfiles Zinc finger RING-type profile. 632 674 IPR001841 -
Tsu02g00367 703 CDD RING-H2_PA-TM-RING 631 674 - -
Tsu02g00367 703 Pfam Ring finger domain 630 674 IPR001841 -
Tsu02g00367 703 SUPERFAMILY RING/U-box 338 383 - -
Tsu02g00367 703 SMART ring_2 632 673 IPR001841 -
Tsu02g00367 703 SMART ring_2 346 404 IPR001841 -
Tsu02g00367 703 ProSiteProfiles Zinc finger RING-type profile. 346 402 IPR001841 -
Tsu02g00367 703 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 383 - -
Tsu02g00367 703 Pfam Wall-associated receptor kinase galacturonan-binding 28 97 IPR025287 GO:0030247
Tsu02g00367 703 Pfam RING-like zinc finger 346 374 IPR001841 -
Tsu02g00367 703 SUPERFAMILY RING/U-box 625 677 - -
Tsu02g00367 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 403 IPR013083 -
Tsu02g00367 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 600 679 IPR013083 -
Tsu02g00367 703 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 383 - -
Tsu02g00367 703 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 383 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00367 Tsu-Chr2 3078737 3084666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00367 378 677 C3H Transcription Factor Family AT2G46495 31.579 3.39e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00367 - - cam:101497311 480.715