Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00356 ATGGAAGCAGATTTCGAGACGAACGATATGCTCACACTGTCACAAGAGGATTCATTTGATACCAATGACAACAATGATAATTTAGATGTTGAAGGGGAAAGATGTGGAATATGTATGGATATGGTTATTGACAGGGGAGTACTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTTCCATCACTAATCTCTGCCCACTTTGCCAGAACGAGTTTCAGTTGATTACTTGTGTTCCAGTATATGACACCATAGGGAGCAATAAAGTTGAAGATGGCTCACTCTTCGGAGAAGATGACGATGACTGGTCGATTGAAGGGGAGACTAACAGTCTCTCATTTCCCTCTTACTACATTGATGAAAATTCAGTTACATGCTTGGATGGTGATGGCTGCAAAATTCGAAATGGATTGGCAAGTATTGAAGGAGATTCTGGTCTTGATACATCAATCGCTTGTGATTCATGTGATATATGGTATCACGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGAGAGTACATGGTTATGCCCAAGATGTGTGGTTGATGAAGTTTCTAAAGAAACAGATACGAATTCAATAAAGGAGGCAGCCCTGGAATGTAACCCAGATAGCAATAACATTAAATGTCATGCTGAGGATTCCAGATTAGTGTCCGTGTCCATTGCTGATACTGGAGAGACTGCTGTTGTTGTCTCAATGGTTGACAGAAACAAATGGGTTCCAGAAACAAGCGAGAGAAGTCAATTGCTTCCTGAAGCTGATAGGGATTTGTTGACTggatcatttaatttaatatcccCAAAAAATAACCAGCTGCAGGGAACAGAGAAGACAACTATGTCACCGATCATGGAGGGAGAAAAACTAGAGCTGTCCTTATCACACAATATGTCATGCAACCCAACTTCTAAATCCTCCGTCCTAAATGATTTAAAGAAAAGTGATAATGGAACTAGATGTGAACTGAGTAGCTTTGACGGAGTCAAGTTATTTGAGTCCAATGTCAAAACTAGTCCATGCAAAATTGAATCTGATATGGGTCTTCATCTTGGTTTGTCGGTGGGCTCTTTTTTATCCGTTGATAATGTGAACAAGAGCAAAACAAAAGATCAAGCAACTAATGTCCCGTGCTCGAGTCCAGAAGAATTTATTTTGAAAGGAGATGAAATTGAAACCAATGCTTGTGAGGACAATGCCAGAGTGACTGGTAGAAAGAGGAAGCATGTTGATTTCAGTCACGAGCAAGTTCATATAAAAGTTGATGAAGATGCCAAGCCTGATCTATCGGCTGAAGCTTcacaaaagaaaattagaacGGCTGCTAGTCAAATGATTAGTGCTAATGACTCGGTCGATGCTCAACTTTCTGACAACACTAAGAAGAACCCTGTTTTAAAACAGTCTCCAACAAAGGAAATTGTGGCATCAGATATAATGAATATCGTTAAAGGGACGAACCGTAGGCTTTCCAAGGGACTTGCGGCCACTAATGCTAGTGGAAAGTTAgctgaaaagaaagaaaacatgGCTGGATTGAGGGTTAAAAAGATTATGAAGAGAGGTTCTGATGATGGAGAATCATCCTCATTAGTCCAAAATCTAAGGAAGGAAATTAGAGAAGCTGTCCGCAACAAATCCTCTATAAACTTTGGGGAAAACCATTTTGATAAAAATCTTCTTGAAGCGTTCAGGACTGCTATAACAGGGCCTAAAACTGAACTTGTAAATAAGTTATCCCCCTCAGCTCTGAAGGCAAGGAAGTCAATGttgcaaaaaggaaaagtacGAGAAAATCTAACAAGGAAAATTTTTGCGTCATCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCACAAGAGCTTCAAAGCCTGAAAAGATCGAAACTTTAAAATCAGTTCTTGATCTCTTAAGAAAAAGTTCGGAGAACTCAGAATCAGAGCAAGCTCCTGAACGTCAGGCCAAGAATCCAATTCTCTCCAGATTGTATATAGCAGACACATCTGTTTTCCCACGGAAAGATGATGTCAAACCTTTTTCAGAGCAGACTAAACAAAATAACTCATCAGCAAAAGGACCAAATCAATCTCTTGACAACAAGACCATTAAAGCAACAGAGGTAAATAATCTTTTATCAAAGACCAGAGTGTGTTCTTCTGAGAAAAAAGTAGATAAGAAGATTGTAAGTGGTCCGGTTGGTAAAGTACATTTAAGCGGTCACTCAGAAGGGACATCAGTTTCTTCATCAGCTGGTGCCAAAGCTGGCACAAAAGAGTCAGGCCTGAAATCTGATTCTATGAAAAGTGATAAAAGAAAATGGGCCTTGGAGGTTCTTGCAAGGAAAACAGCTGTTGCAAGCAGTAACACAGTAAATGAAAGTCAGGAAGACGATGCAATTTTTAAAGGAAATTATCCTCTGCTTGCCCAATTACCAACTGATATGAGACCCGTGTTGGCACCTTGTCGCCACAATAAAATTCCTTTATCAGTGAGGCAGACACAGCTTTACCGCCTGACGGAACGCTTATTGAAGAACACAAATCTGACAAACATTCACAGAACTGCATATACAGAATTGGCTGTTGCAGATGCAATTAATATAGAAAAGGAGGTTGCTGACAGATCAAACAGCAAGCTAGTGTATCAGAATCTTTGTTCACAAGAGCTATTGCGTCGCACAAATAACACAATATCCAATGTAGACACAGACACAAGTCCATCAACCTCATCGCCAGTGCATACTGATCAAACAGAACCGCCAGTGCATACTGATCAATCAGAACTGAATACTGATGATCTTTCTACTGACCCTGCAGTTCAAATAGCATTGCAAAATGCTGGTCTGTTGTCTGATTCGCCACCAAGCAGTCCGCATAAGAACAAAGAAATacataatgaaaatgaaatgtcAGGGCCTGATGATATACTTGAATTAGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGAGGATGATTACATAGGCGCTAGTGTTACAAATATCCCAAACCTAACACTAGAGCAAAGTGAACCAAAAGTGAAACTTGTTTTTTCCACCACGagcttgaagaaaacaaataatgCTTCGGATTCTGCAGACATTAAGGGGTCTGAAAACAAGGAAGTGCCAGGAGATGCCTCTCGCTCACCAAACTGTCACAGTGATGCAGTCCACAGGGATTCTACCATTGATGCGGAAATTGGCCAGCCTTCTGCTTCTTGTGGGCTACAACCATGTGAGGGTGCTGTTGAGCCGGCTGATTCAGAATTTGAAGAATTATATGGCCCTGATAAAGAACCACTTATAAAAAAGTTTCCAGATGGTGAATTACTATCACCACCCGGAGAAGGCAAGACAGAAACTCAAAGCGAGAATAATGATTACCATAAGGAGGAAGAACAGGTCTTAGACAAACTAGAAAATGGTGCTGAATTCAGGAATGGGAATCTTGCAGAAAATGCGTCTGTGCCCACTGTCACGGACAAATCTAATATATCTGGGACcgatgaaaattttcaaaagaagGAAGAGAAATCTGACATCCCTGCCCAGCAGTCTAACAATGAAAATCAAGTAGCGAAGAAGGTAGAAGCATACATCAAGGAGCATATCAGGCCATTGTGCAAGAGTGGTGTCATCTCGGCTGAACAGTACAGGTGGGCTGTTGCAAAAACAACTGATAAGGTTATGAAGTATCATTGCAAATCAAAGAATGCTAATTTCCTTATAAAGGAAGGTGAGAAAGTAAAGAAACTCGCAGAGCAGTTACTAGATAGGTGGAACTTGACACCAAAGGAATGGTGGGTAACTTATGGATCTTCAACCCCTGAACTTCAATCCATTGCATTGAAACTCTTTTCACAACcaacttcttcatcttctgcTGAGAGAAATTGGAGCACATATGGATTTATTCACTCATTGAAAAGGAATAAGCTCAATCCAAAGAGAGCTgaagatttagtttttattcatacaaatcttcgtctTCTCTCGAGAAAGAATAAGGACTACAATGAAGGACCAACAAAAATGTGGGATATTGGTGGAGATGCATTTGATCTAGTTGATGGAGTTGGTATTCTTGAAGTTGCTAGTCTTTCTCTCGATGAACCTGAACTAGAGGCTGCTctttttaatgatgatggaGAGGGAAACGATTGA 4233 0.3881 MEADFETNDMLTLSQEDSFDTNDNNDNLDVEGERCGICMDMVIDRGVLDCCQHWFCFVCIDNWASITNLCPLCQNEFQLITCVPVYDTIGSNKVEDGSLFGEDDDDWSIEGETNSLSFPSYYIDENSVTCLDGDGCKIRNGLASIEGDSGLDTSIACDSCDIWYHAFCVGFDTEGTSESTWLCPRCVVDEVSKETDTNSIKEAALECNPDSNNIKCHAEDSRLVSVSIADTGETAVVVSMVDRNKWVPETSERSQLLPEADRDLLTGSFNLISPKNNQLQGTEKTTMSPIMEGEKLELSLSHNMSCNPTSKSSVLNDLKKSDNGTRCELSSFDGVKLFESNVKTSPCKIESDMGLHLGLSVGSFLSVDNVNKSKTKDQATNVPCSSPEEFILKGDEIETNACEDNARVTGRKRKHVDFSHEQVHIKVDEDAKPDLSAEASQKKIRTAASQMISANDSVDAQLSDNTKKNPVLKQSPTKEIVASDIMNIVKGTNRRLSKGLAATNASGKLAEKKENMAGLRVKKIMKRGSDDGESSSLVQNLRKEIREAVRNKSSINFGENHFDKNLLEAFRTAITGPKTELVNKLSPSALKARKSMLQKGKVRENLTRKIFASSNGRRKRAWDRDCEIEFWKYRCTRASKPEKIETLKSVLDLLRKSSENSESEQAPERQAKNPILSRLYIADTSVFPRKDDVKPFSEQTKQNNSSAKGPNQSLDNKTIKATEVNNLLSKTRVCSSEKKVDKKIVSGPVGKVHLSGHSEGTSVSSSAGAKAGTKESGLKSDSMKSDKRKWALEVLARKTAVASSNTVNESQEDDAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPLSVRQTQLYRLTERLLKNTNLTNIHRTAYTELAVADAINIEKEVADRSNSKLVYQNLCSQELLRRTNNTISNVDTDTSPSTSSPVHTDQTEPPVHTDQSELNTDDLSTDPAVQIALQNAGLLSDSPPSSPHKNKEIHNENEMSGPDDILELDSHPELDIYGDFEYDLEEDDYIGASVTNIPNLTLEQSEPKVKLVFSTTSLKKTNNASDSADIKGSENKEVPGDASRSPNCHSDAVHRDSTIDAEIGQPSASCGLQPCEGAVEPADSEFEELYGPDKEPLIKKFPDGELLSPPGEGKTETQSENNDYHKEEEQVLDKLENGAEFRNGNLAENASVPTVTDKSNISGTDENFQKKEEKSDIPAQQSNNENQVAKKVEAYIKEHIRPLCKSGVISAEQYRWAVAKTTDKVMKYHCKSKNANFLIKEGEKVKKLAEQLLDRWNLTPKEWWVTYGSSTPELQSIALKLFSQPTSSSSAERNWSTYGFIHSLKRNKLNPKRAEDLVFIHTNLRLLSRKNKDYNEGPTKMWDIGGDAFDLVDGVGILEVASLSLDEPELEAALFNDDGEGND 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 694 719 - -
Tsu02g00356 1410 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Tsu02g00356 1410 PANTHER RING FINGER PROTEIN 41, 151 107 1279 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 965 996 - -
Tsu02g00356 1410 ProSiteProfiles Zinc finger RING-type profile. 35 74 IPR001841 -
Tsu02g00356 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 104 IPR013083 -
Tsu02g00356 1410 PANTHER RING/U-BOX PROTEIN 107 1279 - -
Tsu02g00356 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 193 IPR013083 -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 1169 1212 - -
Tsu02g00356 1410 SUPERFAMILY FYVE/PHD zinc finger 149 193 IPR011011 -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 1049 1157 - -
Tsu02g00356 1410 Pfam hAT family C-terminal dimerisation region 1279 1351 IPR008906 GO:0046983
Tsu02g00356 1410 Pfam PHD-finger 152 187 IPR019787 -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 698 719 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 1174 1190 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 1191 1205 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 757 771 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 751 782 - -
Tsu02g00356 1410 SUPERFAMILY RING/U-box 25 80 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 914 949 - -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 1114 1128 - -
Tsu02g00356 1410 ProSiteProfiles Zinc finger PHD-type profile. 67 189 IPR019787 -
Tsu02g00356 1410 Pfam Zinc finger, C3HC4 type (RING finger) 35 73 IPR018957 GO:0046872
Tsu02g00356 1410 SMART PHD_3 135 187 IPR001965 -
Tsu02g00356 1410 MobiDBLite consensus disorder prediction 974 996 - -
Tsu02g00356 1410 SUPERFAMILY Ribonuclease H-like 1149 1354 IPR012337 -
Tsu02g00356 1410 SMART ring_2 35 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00356 Tsu-Chr2 2993894 3004264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00356 30 77 C3H Transcription Factor Family AT2G39100 35.294 6.02e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu02g00356 Dimer_Tnp_hAT 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00356 - - gmx:100808102 1749.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00356 02 2993894 3004264 Tsu02g00356 02 2993894 3004264 ECH