Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00352 ATGGCTTCAACTCCCAAGAAGTCTCTTCTATCTCCCTCTAAATCCAAACTCCGGCCACAATTCTCACCAATTTCAGCACCCGTTACTCCACAGTCGTTACCTACACGCAGATCCACGCGCTTAAGCTCTCTCCTCACCGATTCTCCAAAAACTCCCAATCTAGTTGATGCATTCAACGAAACTCCCAAGAGAGGGAGAAGAATCGGAGAGAAAACTGAGCCGCAATCGAAATCCGTAAAGAGGAAGAGGAAGGAGGATGGTGAGAAATCGAAGAAGAGAAATGAGAAGGATGAATCAGTTTTGTTTGCTCCAACGTCGCCGGATCAATCGGAAActaagaagagaaagaaaaagaatgagGTTGAGAAAACGGTTGTTACTCGAGCTAGAGCTGCGAGAAAAGAGGGGAAAATTGCGAAGGTGCAGTattataaaaaagttgtttatgatggtggtgaatttgaagtTGGGAATGATGTTTATGTGAAAAGGAGAGATGATGCTACTTCTGATGAGGAAGATCCTGAAGTAGAGGATTGTAAATTATGTTTTAGTTCTGGGGATGAAATTATGATTGAGTGTGATAGTTGTTTGGGTGGGTTTCATTTGAAATGTTTGACGCCGCCGTTGAAAGAAGTTCCTGAAGGGGATTGGATTTGTGGGATCTGTGAGGGTCGTAAGATGGGTAAAGATGTTGATTTCCCAAAGCCTCCTGAAGGTAAGAAGCTTGTTAGGACAATGCGTCAGAAGCTTCATTCAAGCGATTTGTGGGCTGCTCGTATTGAGAGTATATGGAAGGAAGTGGATGGAAGCTATTGGTGTCGGGTACGGTGGTATATGATCCCAGAAGAGACTTCTGTTGGACGACAGCCACATAATTTGAGCAGAGAGCTATATCGGACCAATGATTTTGCAAACATTGAGATGGAATCTGTCCTCAGACATTGTTTTGTCATGACCCCTAAGGAGTATGCCAAAGCTAGTGACGAGGGAGATGATGTTTTCTTGTGCGAATATGAATATGACATCCGTTGGCACAGTTTCAAACGCTTGGCTGACATTGATGATGAAAGAGAGAATTCTGATGACAGTGACGGTGACGAAGACTGGAAGGTAGACAAGGAATCAGACTCTGATACAGATGAAGATGTTGAATATGAAGAGGAGAATATTAAAACTGCACAATCTCAACCACCAACAAGCCATCAATTAGCTGCAAATCTGCACAAGGGACGATTCTTTGGACTTCAGAAGATAGGCGCAAAAAGAATTCCAGAGCATATAAGGTCTCACAAACAGACTAATCTTGAAAGAGCAAAGGCATCGCTGTTGTTAGCTTCACTGCCTAAATCTTTACCTTGTAGAAATAAAGAAATGGACGAGATAACTACATTCATTAAAGGTGCTATTTCTGACAATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCCGGAACTGGCAAGACAATGAGTGTACTCTCAGTGATGAGGAGTTTGAGGTCAGAAGTTGATGCAGGAAACATCAAGCCGTACTGTTTTGTAGAGATTAATGGTCTGAAATTGGCTTCGCCAGAGAATATTTATAAGGTCATATATGAGGCATTAAATGGTCACAGAGTTGGATGGAAAGAGGCTCTCCGTTTGCTGAATGAGAGATTTGTAGAAGGAAAGAAAACCGGAGAAGAGTCTGACCGACCATGTATTTTGCTCATTGATGAACTCGATCTTCTTGTAACCAGAAACCAATCGGTTCTGTACAATATTCTTGACTGGCCTACCAAGCCACATTCCAAGCTAATTGTGATAGGAATAGCAAATACAATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATCCAGAGGCTCTGCTTTGCTCCATATAATTATCAGCAGCTTCAAGAAATCATTTCGAGTCGCCTCAATGGAATTGATATCTTTGAAAAACAAGCTATGGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCTGGAGATGCACGTCGTGCTTTGGAAATATGCAGACGTGCAGCTGAAATTGCAGATTATCGTATGAAGAAGCTAGCTTCAAATCCTGATAATGTTGCTGCAGGAAAGGGCCTTGTTTCCATGGCAGACGTCGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAGTGATGAAAAACTGTTCCAGACTTAGCAAAATTTTCCTGACAGCTATGGTGCACGAGCTTTACAAAACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGACGGTTTCATGTATCTGTACCAGCAATGGAGAAGTGTTTCCTGGATATGATATCCTCCTTCAAGTTGGCTGTAAGCTGGGCGAATGCAGGATCATTTTATGTGAAGCAGGCGCCAAGCACAGGTTGCAAAAGTTGCAGCTAAATTTCCCCAGTGATGATGTCGCCTTTTCGCTGAGAGACTGCAAAGATCTACCTTGGTTGTCCAAATATTTAATTTCCGGTGAAACCGCAGAGGGTTGGACAACCAGTTCCAGTGATCTTACCTGCATCATTTTTCTGTGTTTCTGCCATGCTATACTGATAAGTATATATGGTTATGTGGACTTTAAGAAAGTGAAAGTTGCGGTTCCTAGAATTGTGGTTAAGGAAGAGAAGACAATGGCGTTTCCAGCTACAATTGTGATTCTTCCTTTAGGCACTCTTTTCATTCTTTCTGGCCTCAGTGTTAACGTAATTCAGGTTGTCGTCTATGTCCTTTTTCGTCCAATATCAAGGAGTGATATTGATTGGCTCATTGGATGGGTCTTAGCTCAGCGTGTGGGTTGCCTTGGTAGCACTGTAGCCATTATGAAGAAAGAAGTCAAATACCTTCCTGTTCTAGGTTGGTCAATGTGGTTTgctgattttttatttctggAAAGAAATTGGGCTAAAGATGAACAAACATTGAAGTCAGGTTTTAAGCAGCAAGTGCGCAATCCAGTGCCTTTTTGGTTGGCTCTTTTTGTCGAAGGAACTCGCTTTACACAGTCAAAGCTTCTAGCAGCTCAAGAATTTGCTACTTCAAGAGGGATGCCTGTACCGAAAAATGTTTTGGTTCCTCGTACTAAGGGTTTTGTCACGGCTGTAACACAAACACGGACATTCATTCCAGTCATTTATGATTGTACGTTTATAGTTTCAAAGAACAAGCCTTCACCAACAatgttgaaaatatttaaaggcATTCCTTCTACGGTGAAGGTTCAAGTTAAGCGACACAAAATGGAGGAACTTCCAGAAACAGCTGATGGTATTGCACAGTGGTGCAAAGACATTTTTATTGCCAAGGATGCTTTACTGGAGAAATATAAAACTACAGACAGATTCAGTGAACTTGAACTTCAAGAAATTCGCCGGCCTAAAAGTTCTATAATGGTTGTGCTAAGTTGGTCTTGTCTTCTTGGTTTCCTTCTTTATGAATTCTTCAAGTGGTCATCACTCCTCTCCACATGGCAAGGAATTTTGTTTACAGTACTTTTCCTGGCAATTGTATCAGTTATTATGGAAATGCTCATTCAATCATCGCAATCAGAAAGTTCTAAACCCGCCAATTTACCTATACAAGACCCCATCAAGCAGAGGCTTCTTCAGACATGA 3642 0.4097 MASTPKKSLLSPSKSKLRPQFSPISAPVTPQSLPTRRSTRLSSLLTDSPKTPNLVDAFNETPKRGRRIGEKTEPQSKSVKRKRKEDGEKSKKRNEKDESVLFAPTSPDQSETKKRKKKNEVEKTVVTRARAARKEGKIAKVQYYKKVVYDGGEFEVGNDVYVKRRDDATSDEEDPEVEDCKLCFSSGDEIMIECDSCLGGFHLKCLTPPLKEVPEGDWICGICEGRKMGKDVDFPKPPEGKKLVRTMRQKLHSSDLWAARIESIWKEVDGSYWCRVRWYMIPEETSVGRQPHNLSRELYRTNDFANIEMESVLRHCFVMTPKEYAKASDEGDDVFLCEYEYDIRWHSFKRLADIDDERENSDDSDGDEDWKVDKESDSDTDEDVEYEEENIKTAQSQPPTSHQLAANLHKGRFFGLQKIGAKRIPEHIRSHKQTNLERAKASLLLASLPKSLPCRNKEMDEITTFIKGAISDNQCLGRCLYIHGVPGTGKTMSVLSVMRSLRSEVDAGNIKPYCFVEINGLKLASPENIYKVIYEALNGHRVGWKEALRLLNERFVEGKKTGEESDRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFAPYNYQQLQEIISSRLNGIDIFEKQAMEFASRKVAAISGDARRALEICRRAAEIADYRMKKLASNPDNVAAGKGLVSMADVEAAIQEMFQAPHIQVMKNCSRLSKIFLTAMVHELYKTGMGETTFEKLAMTVSCICTSNGEVFPGYDILLQVGCKLGECRIILCEAGAKHRLQKLQLNFPSDDVAFSLRDCKDLPWLSKYLISGETAEGWTTSSSDLTCIIFLCFCHAILISIYGYVDFKKVKVAVPRIVVKEEKTMAFPATIVILPLGTLFILSGLSVNVIQVVVYVLFRPISRSDIDWLIGWVLAQRVGCLGSTVAIMKKEVKYLPVLGWSMWFADFLFLERNWAKDEQTLKSGFKQQVRNPVPFWLALFVEGTRFTQSKLLAAQEFATSRGMPVPKNVLVPRTKGFVTAVTQTRTFIPVIYDCTFIVSKNKPSPTMLKIFKGIPSTVKVQVKRHKMEELPETADGIAQWCKDIFIAKDALLEKYKTTDRFSELELQEIRRPKSSIMVVLSWSCLLGFLLYEFFKWSSLLSTWQGILFTVLFLAIVSVIMEMLIQSSQSESSKPANLPIQDPIKQRLLQT 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00352 1213 MobiDBLite consensus disorder prediction 357 385 - -
Tsu02g00352 1213 MobiDBLite consensus disorder prediction 1 121 - -
Tsu02g00352 1213 Pfam AAA lid domain 654 687 IPR041083 -
Tsu02g00352 1213 ProSiteProfiles Zinc finger PHD-type profile. 177 226 IPR019787 -
Tsu02g00352 1213 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 99 828 IPR020793 -
Tsu02g00352 1213 Pfam Acyltransferase 926 1054 IPR002123 GO:0016746
Tsu02g00352 1213 SMART plsc_2 926 1041 IPR002123 GO:0016746
Tsu02g00352 1213 SMART BAH_4 211 352 IPR001025 GO:0003682
Tsu02g00352 1213 SMART AAA_5 476 630 IPR003593 -
Tsu02g00352 1213 SMART PHD_3 179 224 IPR001965 -
Tsu02g00352 1213 ProSitePatterns Zinc finger PHD-type signature. 180 223 IPR019786 -
Tsu02g00352 1213 Pfam Acyltransferase C-terminus 1073 1145 IPR032098 -
Tsu02g00352 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 689 IPR027417 -
Tsu02g00352 1213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 233 IPR013083 -
Tsu02g00352 1213 Pfam ATPase family associated with various cellular activities (AAA) 481 626 IPR003959 GO:0005524|GO:0016887
Tsu02g00352 1213 MobiDBLite consensus disorder prediction 60 99 - -
Tsu02g00352 1213 Gene3D - 437 629 IPR027417 -
Tsu02g00352 1213 MobiDBLite consensus disorder prediction 1 55 - -
Tsu02g00352 1213 SUPERFAMILY FYVE/PHD zinc finger 167 227 IPR011011 -
Tsu02g00352 1213 ProSiteProfiles BAH domain profile. 235 352 IPR001025 GO:0003682
Tsu02g00352 1213 Pfam BAH domain 259 349 IPR001025 GO:0003682
Tsu02g00352 1213 Gene3D - 630 717 - -
Tsu02g00352 1213 CDD LPLAT_LCLAT1-like 926 1086 - -
Tsu02g00352 1213 Pfam PHD-finger 180 224 IPR019787 -
Tsu02g00352 1213 Gene3D - 244 436 IPR043151 -
Tsu02g00352 1213 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 99 828 - -
Tsu02g00352 1213 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 928 1085 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00352 Tsu-Chr2 2961208 2973421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00352 6 832 Core DNA Replication Machinery Family AT4G14700 64.685 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu02g00352 AAA 3.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00352 K02603 - gmx:100798547 1313.52