Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00312 ATGACCACGCCAGAAGAAAGTGCCTCCACCGGCGCCGCCGTCGTCGCCGCAGCTCCGGAAGGTGGAGAGAAGAACGGCATAAATAGTGAGCTATGGCAAGCTTGTGCTGGTCCTCTTGTCAATCTTCCTTTAGCTGGAACTCATGTTGTTTACTTTCCTCAAGGACATAGCGAACAAGTTGCAGCATCTTTGAAGAAAGATGGGGATGTGCAAGTACCAAACTATTCAAATCTTCCTTCAAAGTTACCGTGTATTCTTCACGGTCTCACTTTGCATGCAGATCCGGATACAGATGAAGTATATGCCCGGATGACACTTCAACCGGTGCCTTCTTTTGACATGGATGCCTTATTAAGATCAGATATCTCTCTCAAATCCAACAAGACACAACCCGAGTTTTTCTGTAAACAACTGACAGCGAGTGATACGAGTACTCATGGAGGTTTCTCTGTACCTCGTCGTGCTGCGGAGAAGATTTTCCCCCCTCTTGATTTCTCTGCGCAACCTCCTGCTCAAGAACTTGTCGCAAAGGATTTGCATGGTAATGTTTGGAAGTTCCGCCATATATATCGTGGACAACCGAAACGTCACTTGCTTACAACTGGATGGAGCCTATTTATCAGTGGAAAGAAGCTTATAGCTGGAGACTCGGTTTTATTTATACGAGATGAAAAACAGCAGTTGCTTTTGGGTATCAGACGAGCAAACAGGCAACCGACCAATCTATCATCCTCAGTACTATCAAGCGATAGTATGCACATTGGAATTCTGGCTGCAGCAGCTCACGCTTCTGCAAACAATAGTCCCTTCACCGTGTTTTATAATCCTAGGGCCAGTCCCTCAGAGTTTGTTATTCCATTGGCCAAGTACTACAGGGCAGTATACAGCCACCAAATATCGCCTGGGATGCGCTTTCGAATGATGTTTGAAACAGAAGACTCGGGAACAAGAAGATATATGGGTACAGTTACAGGTGTCAGTGATCTGGATCCCTTGAGATGGAAAAACTCTCAGTGGCGTAATTTGCAGGTTGGTTGGGATGAATCCACTGCTGGGGAAAGGCGAAATCGGGTCTCAATATGGGAAATCGAACCTGTTACTGCTCCATTTTTCATCTGTCCGCCTCCATTCATCAGATCCAAGAGACCAAGACTACCCGGAATGCCTGATGACGAGCTATTTAATGTCAGTAACCTTTTCAAAAGTACAATGCCTTGGCTCGGTGATGATATGAGTATGAAGGATCCTCAGGCTTTCCCTGgcatgagcttagctcaatggATGAACTTACAGCAAAATCCCACTCTGGCTAACTCATTGCAACAAAATCACGTGCCTTCCATGTCTGGATCCGTTCTACACAATCTTCCTGGAGCCGATATTGCTCATCAATTGGGATTCTCTACTCAACAAATCTCTCAACCAAACAACGTAGCTTTCAATGCTCCAGGTATGCTTCAGACTCCCCAACAACTCGATCACCTTCAGAAGCTATCATCCACATCTAGCGGATTGGGAACAGTCATGCAGCCAGAACAACAACATTCTAGACAGAACTTGATAAATCAAACTTTACCACAGAGTCAAGTTCAGACTCATGTTCTTAATCCACAGAGTGTCGTCCAAACGAACAATATACTTCAATCACAACAACAATCCACTCAAAACCAACAACTCCATAGAAGCCTCTCTCAGAACCCTCTTCATCAGCAGCTTCAACAGACTATAATTGGTCAGAACCAACAGCAAAATATGATCAGGTCCACTATGCCAGATCATATTAATCAACAGTTACCTATGTCGGATAATCAAATTCGGATTCAGTTGTTACAGAAGcttcaacagcaacaacaaacATTCTTTGCTCAGCAATCTGCATTGCAGCAGCCTGCTCAACTTATTCAAAACCAAGAGCAGCAGAGGCAACTTTTAGATGTAACACACAACTCTAGGGCATTAACTTCCAATCAAGTGTTTGAAATTCCTCCTACACTTCAAAACTCACTGCCTGGGACTAATTCCATGGTCCATCAGATGACAGATCATAGTAGCCAGAACAATGTTCAGTTCTCTCATCCATCCAAGCAACAAAAGCTTCAACATCAACCACAACAAATGCAACCCGACTCGGTTTCTAAAATGTCTAGTCATGTTGGACTTCCTCCTGCAACTACAACTAATCATTTATCTGCTTCTGGTAGCAGTACACGGACTGTAGCAACTGGAACAGGGCCATCGGTAATTATTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAATTGTGCCAATgtgcttcctccaatgacaacaTCCCACATCCTTATGAGCACAATAGGGGATGACGCGGTTCAGTCTTCTGCGACGATCTTGAGCCAAAGTGTCTTAGAGACCATGTCATCTAGTGCAAATGTGTTAAAATATGTACCACCAAAATATGAAGCTAAGCCTTCTTTAAATCACAATCAAGGGAATTTTTACCCTCAGACTTGCTTGAACGGTGGTGCTGTCCAGACAGATTGTTTGGATACGTCGTCTTCTACAACTTCAGTTGGCCTTTCTCAGAGCGATACACGCTTTCATCAGAATGACAACCTGTTATCTTACAATCCACAATCGATGTTTTGTAGAGACAACATTCAAAATATGGAAGTTCAGGCTGATGCTAGGTGCAATATTGCAAATGGCAACAGCATGAATGGGCAAATGAGAATGCCACCAAATCTAGATTCTACGGTAACCAAAGGCACAAAAAGGCCGGGCAAGGATTTGTCAAATAATTTCTCTTCCTCAGGCTTGCTTGGTGACTATGAAAATAACAATGATGCTCAGCATGAACTTTCATCTTCATTGGTTTCACAAACATTTGGAGTCCCTGATATGACCTTCAATTCAATTGATTCCACCATAAATGATAGTAGTTTCTTGAATAGTGGTCCATGGGCTCCACCGCCGCCGCCACATCAATTTCAACGGATTAGAACATATACCAAGgtaTATAAACGTGGGGCTGTGGGAAGATCCATTGACATAACAAGATATTCAGGTTACGAGGAGCTTAAACATGATCTGGCTCGTAGGTTTGGTATTGAGGGACAGCTGGAGGATCGACAAAGGATAGGTTGGAAACTTGTTTATGTAGATCATGAAAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGTAA 3195 0.4263 MTTPEESASTGAAVVAAAPEGGEKNGINSELWQACAGPLVNLPLAGTHVVYFPQGHSEQVAASLKKDGDVQVPNYSNLPSKLPCILHGLTLHADPDTDEVYARMTLQPVPSFDMDALLRSDISLKSNKTQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDFSAQPPAQELVAKDLHGNVWKFRHIYRGQPKRHLLTTGWSLFISGKKLIAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHASANNSPFTVFYNPRASPSEFVIPLAKYYRAVYSHQISPGMRFRMMFETEDSGTRRYMGTVTGVSDLDPLRWKNSQWRNLQVGWDESTAGERRNRVSIWEIEPVTAPFFICPPPFIRSKRPRLPGMPDDELFNVSNLFKSTMPWLGDDMSMKDPQAFPGMSLAQWMNLQQNPTLANSLQQNHVPSMSGSVLHNLPGADIAHQLGFSTQQISQPNNVAFNAPGMLQTPQQLDHLQKLSSTSSGLGTVMQPEQQHSRQNLINQTLPQSQVQTHVLNPQSVVQTNNILQSQQQSTQNQQLHRSLSQNPLHQQLQQTIIGQNQQQNMIRSTMPDHINQQLPMSDNQIRIQLLQKLQQQQQTFFAQQSALQQPAQLIQNQEQQRQLLDVTHNSRALTSNQVFEIPPTLQNSLPGTNSMVHQMTDHSSQNNVQFSHPSKQQKLQHQPQQMQPDSVSKMSSHVGLPPATTTNHLSASGSSTRTVATGTGPSVIIDDVPSCSTSPSTNNCANVLPPMTTSHILMSTIGDDAVQSSATILSQSVLETMSSSANVLKYVPPKYEAKPSLNHNQGNFYPQTCLNGGAVQTDCLDTSSSTTSVGLSQSDTRFHQNDNLLSYNPQSMFCRDNIQNMEVQADARCNIANGNSMNGQMRMPPNLDSTVTKGTKRPGKDLSNNFSSSGLLGDYENNNDAQHELSSSLVSQTFGVPDMTFNSIDSTINDSSFLNSGPWAPPPPPHQFQRIRTYTKVYKRGAVGRSIDITRYSGYEELKHDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWE 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00312 1064 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 1064 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu02g00312 1064 Gene3D - 991 1064 - -
Tsu02g00312 1064 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
Tsu02g00312 1064 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tsu02g00312 1064 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Tsu02g00312 1064 CDD B3_DNA 133 225 IPR003340 GO:0003677
Tsu02g00312 1064 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Tsu02g00312 1064 PANTHER AUXIN RESPONSE FACTOR 17 1064 - -
Tsu02g00312 1064 Gene3D - 298 369 - -
Tsu02g00312 1064 Gene3D - 132 235 IPR015300 -
Tsu02g00312 1064 ProSiteProfiles PB1 domain profile. 996 1064 IPR000270 GO:0005515
Tsu02g00312 1064 MobiDBLite consensus disorder prediction 681 744 - -
Tsu02g00312 1064 MobiDBLite consensus disorder prediction 915 943 - -
Tsu02g00312 1064 MobiDBLite consensus disorder prediction 681 743 - -
Tsu02g00312 1064 SMART B3_2 134 236 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00312 Tsu-Chr2 2639525 2645864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00312 22 486 B3 DNA Binding Superfamily AT1G19220 70.021 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu02g00312 B3 1.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00312 - - ccaj:109803454 1452.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00312 02 2639525 2645864 Tsu02g00312 02 2639525 2645864 ECH