Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00310 ATGAGAGGAAAGGGAACGATTGTGCCACCGAGTTATTCTCACGGTGGAAAATTTCTTCCAAGAGAGAAAGTTGATGCTACTTCATCTTCAAGATATGATATCGAAGTTGATGGAAACGGTAAGAGAATTCAAAAGCGTAAATGTCTTGAAGAGTTGTATACAACAGGTCGCATTGTAAACAGTGTGTTGATGAATGATGGTCCTGCTTTAGGACGGGAATTTGATTCTATTCCTTCAGGACCCAAAAATTACACTGCTGCGTGTCAACAGGACCAAGAGCCTGTCAAAAGGAGAAAGGCTTCCATAAATGCAATTCAAAATCATTCTAATTGTAATACAAAAGCACCTGTGAAGAAACATGGTATGGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTGATGCCAGAAACACTCCAGTTGGTTTTGGGTTTGCTGACCGGGAAGTTCATCTAACCTCTAATTCTAAAACACCATTGTCGACCAACAGGCCACGGAAAGCAGTGACCAGGAATgcaaaaccaaaaaataagaTGCCAAATAGGAAAACTACATTACAGGAGAAGAGGAAACAGTTTGTGCAAAAAAGAGTGGGTGAATCAAACCAATATGTGACTCAAAACCAGCCTCCCATTGAAAAATGTGAACTTGCTTTAGATAGCTCAATATCTGAGGAGGGTGTTGATCAAATTTCAATGTTAATTGATGATGAAGAGTTAGAGCTGAGAGAGTTACAAGAAGGAACCAATCTGCTTATCTGTTCAGATCAACTAGTTGCCGGTGGAATGCTTGGTGGCTCACTTTGTCCAGATGTGCTAGTCAAGTTCCCCCCAGCTGCTATCAAGATGAAGAAACCTATACATTTGCAACCTTGGGACTCCTCCCCAGAACTggtgaagaaattatttaagGTGTTCCATTTCATTTATACGTATGCTGTAGTTGTTGATGTTTGTCCCTTCACTCTCGATGAGTTTGTTCAGGCATTTCATGATAAGGATTCCATGTTACTTGGAAAGATTCATGTGGCCCTTCTCACACTGCTTCTATCTGACATTGAAGTGGAGCTTTCTAATGGGTTTTGTCCTCATTTAAATAAGTCATGCAACTTTCTTGCGCTGCTTCACTCTGTTGAAAATCAAGAATATTCCCTTGACGTTTGGAGAAGATCTCTAAACCCTCTTACTTGGATTGAAATACTCCGTCAAGTGCTGGTAGCTGCTGGATTCGGTTCCAAACAAGGTGCCTTACGAAGAGATGGCCTTGGCAAGgaattggATATTCTCGTAAACTATGGCCTATGCCCTGGCACCTTGAAGTGTGAGCTGTTTAAAATCTTGTCAGAACGAGGTAACAATGGGTGCAAAGTTTCTGAGCTGGCAAAGTCATTGCAGATTGCAGAATTAAACCTTGCCAGCACAACAGAGGAACTTGAGTCTTCAATATATTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCGTCTGCATATCGATTACGTATGAGCACTGTTTCAAAGGACAATGATGACTGCGAGTCAGATACAGAGAACTCTGGGAGTGTTGATGACGAGCTTAATGGCTCTGATACATGTAGCAGTGGAGATGATTTTGAAAGCAGTTCAATAAACTCtaatataagaaaattgaaGCGCGATAACAATCGTAAAGTTAAACATAATAGGCTGAAAGTTTACACTGAAATTGATGAGAGCCGTGCAGGAGAAGTGTGGTTGTTAGGACTGATGGATAGTGAATACTCAGatttgaaaattgaagaaaaattgaaTGCGTTGGCAGCGTTGACCGGTCTTCTTTCATCTGGATCCAGCATCAGGATGAAGGATCCAGTAAAAGTTACAGCTGATTGTAGTTCCAGTATCCAATTACGTGGTTCTGGAGCAAAAATTAAGAGATCAGTGGTAAAGAATCCAGGGTCATTTTTGAACCCAATTGAACAAATGCAATGTATTAAAGAGGTGCACATGAATTCTCACCCTGGTCCAGTAGATTCCTCATTGTTAGTCTCAAAACTCCATATGCCGGAGGCATCCtttgagaaaagaaaaggttCAGATGATTCACACCCCATACAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTCTTCTTAGGCCCTTGTAATGTAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCCTCTGAAGATGGCCACTGGGAGGTGATTGATACAGAAGAGGCATTGTGTGCATTGTTGTCAGTTCTGGATGATAGAGGGAAACGTGAGGCTCTTCTTATTGAATCTTTGGAGAGACGACAAACATCTCTATGCAGATATATGTCCAGGATTAAGGCTAACAAGATTGGAATGAGGTGTATGTCACATTCTGATCAGTCTGAGCTGGATAGGGTTACAGAAGATAGCTGTTCTCCAGTATCTGATGTAGACAACCTGAACCTGGCTGAGTCTGCTAGAGACTCTTTGCCGTCACCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAAGCAGAGGAACATCTGCAAAAATGGATCCGTGTTCAAAAATACGATTCTTGGATTTGGAATTCATTTTATTTAGATCTCAATGTTGTAAAATATGGCAGAAGGTCTTATCTTGACTCTCTCGCCAGGTGTAGCAGTTGCCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAACTTGATTTTGACCTCGAAGAAAAATATGCGATCCACATAGCCATGTGCACGGAGAAAGAAGACAGCAATACATTTCCGACTCATAAAGTCTTGTCATCACAGATTCAATCATTGAAAGCTGCAATTTATGCAATTGAGTCTGTTATGCCTGAAGATGCCCTGGTTGGTGCTTGGAGGAAGTCTGCCCATAATCTATGGATCAAAAGGCTTAGACGCACCTCGACTTTAGTGGAGCTTTTGCAGgTTCTTGCTGATTTTGTTGGTGCCATCAACAAGGGCTGGTTATTTCAGTGCAAATTTCCAGACGGCGTGGTTGATGAAACGATTGCATCTTTTGCATCAATGCCCCATACTTCATCTGCTCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCTTATCTTGACAGAGTCCAAACTCAGAAGAAACAGGGAAATGGTAAGCATGGTTCTTGGTGA 3195 0.4059 MRGKGTIVPPSYSHGGKFLPREKVDATSSSRYDIEVDGNGKRIQKRKCLEELYTTGRIVNSVLMNDGPALGREFDSIPSGPKNYTAACQQDQEPVKRRKASINAIQNHSNCNTKAPVKKHGMGKGLMTVWRATNPDARNTPVGFGFADREVHLTSNSKTPLSTNRPRKAVTRNAKPKNKMPNRKTTLQEKRKQFVQKRVGESNQYVTQNQPPIEKCELALDSSISEEGVDQISMLIDDEELELRELQEGTNLLICSDQLVAGGMLGGSLCPDVLVKFPPAAIKMKKPIHLQPWDSSPELVKKLFKVFHFIYTYAVVVDVCPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELSNGFCPHLNKSCNFLALLHSVENQEYSLDVWRRSLNPLTWIEILRQVLVAAGFGSKQGALRRDGLGKELDILVNYGLCPGTLKCELFKILSERGNNGCKVSELAKSLQIAELNLASTTEELESSIYSTLSSDITLFEKISSSAYRLRMSTVSKDNDDCESDTENSGSVDDELNGSDTCSSGDDFESSSINSNIRKLKRDNNRKVKHNRLKVYTEIDESRAGEVWLLGLMDSEYSDLKIEEKLNALAALTGLLSSGSSIRMKDPVKVTADCSSSIQLRGSGAKIKRSVVKNPGSFLNPIEQMQCIKEVHMNSHPGPVDSSLLVSKLHMPEASFEKRKGSDDSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRYMSRIKANKIGMRCMSHSDQSELDRVTEDSCSPVSDVDNLNLAESARDSLPSPGAVVIEAGKKAEEHLQKWIRVQKYDSWIWNSFYLDLNVVKYGRRSYLDSLARCSSCHDLYWRDERHCKICHMTFELDFDLEEKYAIHIAMCTEKEDSNTFPTHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHNLWIKRLRRTSTLVELLQVLADFVGAINKGWLFQCKFPDGVVDETIASFASMPHTSSALALWLVKLDAIIAPYLDRVQTQKKQGNGKHGSW 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00310 1064 MobiDBLite consensus disorder prediction 525 545 - -
Tsu02g00310 1064 Pfam DDT domain 298 353 IPR018501 -
Tsu02g00310 1064 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 578 617 IPR028942 -
Tsu02g00310 1064 MobiDBLite consensus disorder prediction 155 195 - -
Tsu02g00310 1064 MobiDBLite consensus disorder prediction 511 545 - -
Tsu02g00310 1064 Coils Coil 458 478 - -
Tsu02g00310 1064 SMART testlast3 297 356 IPR018501 -
Tsu02g00310 1064 PANTHER OS07G0619600 PROTEIN 39 1056 - -
Tsu02g00310 1064 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 703 776 IPR028941 -
Tsu02g00310 1064 MobiDBLite consensus disorder prediction 155 169 - -
Tsu02g00310 1064 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 39 1056 IPR044977 GO:0006357
Tsu02g00310 1064 ProSiteProfiles DDT domain profile. 297 356 IPR018501 -
Tsu02g00310 1064 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00310 Tsu-Chr2 2612657 2620526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00310 217 518 Homeobox Transcription Factor Family AT1G28420 33.819 1.68e-42 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Tsu02g00310 WSD 2.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00310 - - aprc:113853612 1640.94