Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00309 ATGGCCGTATCACTATCTCTTCAACTTCCATTCCTTTCTTCTCCGAACACCAAAACTCAAACTCGCCGGAAATTCATCTGCGTTGCGGCGGCGGCGGCGGCGAAAAGCGAGATTCCCCTCCTCCAAGTCAACGATCTTCGAGCAAAAATCGTAGAATCAAATGTCGAAATTCTCCGAGGCGTTAATCTCACAATTAACAAAGGAGAAATTCACGCCATCATGGGAAAAAACGGTTCTGGAAAAAGTACTTTCGCGAAAGTTCTCGTTGGTCATCCAGATTATGAAGTTACTGGTGGAACCGTTGTTTTCAAAGGGGAAAATTTGCTTGAAATGGAACCTGAAGAAAGAGCACTTGAAGGTCTTTTCATGAGTTTTCAATCACCTGTTGCAATCCCTGGTGTTTCAAATGATCAATTTCTTCTTATGGCTTATAATGCTCGAAGAAAaaaacttggtcttcctgaacTTGGACCCCTTGAGGGTTTTTCATATTTAATGGAGAAGCTACGACTTGTTAACATGAAGCCTGACTTTCTTAATAGGAATGTCAATGAAGGGTTTAGTGGAGGTGAAAGAAAACGCAATGAAATCTTGCAGCTTGCCGTTTTGGGGGCAGATTTGGCTATTTTGGATGAAATTGATTCAGGATTGGATGTTGATGCACTCAGGGATGTGGCAAGTGCAGTTAATAAAATTCTTACCCCAGAAAAGTCTCTGCTGATGATTACTCACTATCGGCGAATTCTTGATCTTTTGAAACCTTCCCATGTCCATGTTATGGACAACGGCAAAATTGCAAGGACAGGCGACCTATCTATGGTAGATGCAATTGAGGCAGATGGATATGAACTAGTCTCTGCTTTAACTTAA 870 0.4092 MAVSLSLQLPFLSSPNTKTQTRRKFICVAAAAAAKSEIPLLQVNDLRAKIVESNVEILRGVNLTINKGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTGGTVVFKGENLLEMEPEERALEGLFMSFQSPVAIPGVSNDQFLLMAYNARRKKLGLPELGPLEGFSYLMEKLRLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVASAVNKILTPEKSLLMITHYRRILDLLKPSHVHVMDNGKIARTGDLSMVDAIEADGYELVSALT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00309 289 CDD ABC_FeS_Assembly 41 282 IPR010230 GO:0005524
Tsu02g00309 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 271 IPR027417 -
Tsu02g00309 289 Pfam ABC transporter 58 212 IPR003439 GO:0005524
Tsu02g00309 289 SMART AAA_5 67 264 IPR003593 -
Tsu02g00309 289 ProSitePatterns ABC transporters family signature. 187 201 IPR017871 GO:0005524
Tsu02g00309 289 Gene3D - 40 287 IPR027417 -
Tsu02g00309 289 TIGRFAM sufC: FeS assembly ATPase SufC 41 284 IPR010230 GO:0005524
Tsu02g00309 289 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
Tsu02g00309 289 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 31 286 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00309 Tsu-Chr2 2607948 2611440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00309 54 281 Calmodulin-binding Proteins AT2G36910 24.691 6.28e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00309 K09013 - gmx:100811883 431.795