Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00297 ATGGGGAGAAGAAAGTGTTCACATTGTGGTAAGATAGGACATAATTGTAGGACATGCACATCCTTCACCCTTGGAATTGGAGGACTTCGTCTCTTTGGCGTCCAACTATCTTCATCTAATAATTCTACCATCATCAAGAAAAGCTTTAGCATGGATACCTTTCCTTCACCATCCtctccatcttcttcattctcttcatcaacatcattaaccaatattgatgataataatcatcatcatcatcacaaatcTACCTCTACTAATATTGCATATCTATCAGATTGTTTTATAGGTCCACCCCAAGAGAGGAAAAAAGGAGTCGCATGGACAGAAGAGGAGCATAGAATGTTTCTTGTTGGACTAGAAAAGATGGGAAAAGGAGATTGGAGAGGTATCTCTAAAAACTTCGTCCCCACAAGAACTCCTACACAAGTTGCGAGTCATGCTCAAAAATACTTTCTCCGATTGTCAACTATCAATAGCAAGAAGCGACGTTCAAGTCTCTTTGACTTGGTTGGGAGAAAGAACACCAAAACAGAAGGTCAAGGACATACTAATTCAGTAGTTTTGGGTCATAAATTAGAGAATAAGTGTAAATGTGAAGTTGAGATTAATGATGGCACCACTTTGTCCAACTTTAAACAAGAAGATGTAGCCAAATCAGATAAGCAAGAAATTAGTTACTCTCAAGTTAATTGGCTAAATAATCACTCTACAAATTATGCAACAGTGCCTAATTTGGACCTCACACTTGCAGTTGCATCCCCTAAGAAGACTAATAAGACCACCCCAGCTGGCCCATTGCTTTTTGGCCCAATTAGTgtcacttaa 831 0.355 MGRRKCSHCGKIGHNCRTCTSFTLGIGGLRLFGVQLSSSNNSTIIKKSFSMDTFPSPSSPSSSFSSSTSLTNIDDNNHHHHHKSTSTNIAYLSDCFIGPPQERKKGVAWTEEEHRMFLVGLEKMGKGDWRGISKNFVPTRTPTQVASHAQKYFLRLSTINSKKRRSSLFDLVGRKNTKTEGQGHTNSVVLGHKLENKCKCEVEINDGTTLSNFKQEDVAKSDKQEISYSQVNWLNNHSTNYATVPNLDLTLAVASPKKTNKTTPAGPLLFGPISVT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00297 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 157 IPR017930 -
Tsu02g00297 276 CDD SANT 108 153 IPR001005 -
Tsu02g00297 276 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
Tsu02g00297 276 PANTHER TRANSCRIPTION FACTOR KUA1 3 276 - -
Tsu02g00297 276 MobiDBLite consensus disorder prediction 54 83 - -
Tsu02g00297 276 Pfam Myb-like DNA-binding domain 108 153 IPR001005 -
Tsu02g00297 276 SUPERFAMILY Homeodomain-like 102 157 IPR009057 -
Tsu02g00297 276 Gene3D - 107 160 - -
Tsu02g00297 276 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 3 276 - -
Tsu02g00297 276 SMART sant 105 155 IPR001005 -
Tsu02g00297 276 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 104 155 IPR006447 GO:0003677
Tsu02g00297 276 MobiDBLite consensus disorder prediction 54 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00297 Tsu-Chr2 2499786 2501281 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu02g00297 Myb_DNA-binding 8.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00297 - - cam:101500241 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00297 02 2499786 2501281 Tsu02g00297 02 2499786 2501281 ECH