Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00282 ATGTCGATGATGTTAGGGGAACCACCCCATCGTACAAATCCGACCGTACACGTGCCACAATGGCCAACGATGAACAATCCCACGGCGGAGATTTTTTCTCCATTAACCGCTAATGAAGATTATTCTCAGTTCTACTTGCAAGAAGCGCTTAACGCTCTTCAACACTATCTTCCATCTAACGAACACGACGACGCTGATTCTGACTCGGAGATTTTTCCGAGTCATGAATCGGTGGATGCATATTCCAATGATCATTTCCGCATGTTCGAGTTCAAGATTCGTAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCTTTTGCTCACCCCGGCGAGAAAGCTCGCCGTCGTGACCCGAGGAAGTTTCACTATTCCGGCACTTCGTGTCCTGATTTTCGTAAAGGAAGTTGCAAGAAAGGTGATTCGTGTGAGTTTGCGCATGGAGTTTTTGAGTGTTGGCTTCATCCTGCACGTTACCGTACTCAGCCGTGTAAAGACGGTACAAGTTGCCGCCGGCGAGTTTGCTTTTTTGCTCACACGACGGAGCAACTTAGGGCTCCGACTCAACAGAGTCCACGGAGTGTTAACTCTGCTGATTCATATGATGGTTCTCCTCTTCGTCTTGCTATTGAATCATCCTGTGTGAAAACTCTTCCGTTTATTTCTTCTCCTGGATCTGTTTCTCCGGTGGAGTCTCCTCCGGTGTCTCCGATGACTCGGTCATTGGGAAGGTCTATGGGTTCTGTGAATGTGAATGAGATGGTTGCTTCTCTAAGAAACTTGCAACTTGATAAGATGAAATCGTTACCTTCTTCTTGGAATGTTCAAATGGGTTCTCCTAGATTCGGATCTCCGAGAGGACCCATGATCCGACCCGGTTTCTGTAGCTTACCGACAACGCCTACACAGGTGCCGTGTCGCGGCGGGGTTAACCATTTTGATCTATGGGATCAGTGCTGTGAGGAAGAGCCTGTGATGGAGAGGGTTGAATCTGGAAGGGATATAAGGGTGAAGATGTTTGAGAAACTGAGCAAAGAAAACTCTTTGGATAGATTGGGTTCGGGTATGGTTCCGGGTCAGGTTGATGTTGATGGGGCTCCGGATGTTGGATGGGTTTCTGAGCTGGTTTTCTTGGAAGATCTAGACGACCAGtaa 1161 0.4806 MSMMLGEPPHRTNPTVHVPQWPTMNNPTAEIFSPLTANEDYSQFYLQEALNALQHYLPSNEHDDADSDSEIFPSHESVDAYSNDHFRMFEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTSCPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTTEQLRAPTQQSPRSVNSADSYDGSPLRLAIESSCVKTLPFISSPGSVSPVESPPVSPMTRSLGRSMGSVNVNEMVASLRNLQLDKMKSLPSSWNVQMGSPRFGSPRGPMIRPGFCSLPTTPTQVPCRGGVNHFDLWDQCCEEEPVMERVESGRDIRVKMFEKLSKENSLDRLGSGMVPGQVDVDGAPDVGWVSELVFLEDLDDQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00282 386 Gene3D - 126 189 - -
Tsu02g00282 386 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 131 150 IPR000571 GO:0046872
Tsu02g00282 386 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
Tsu02g00282 386 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 378 - -
Tsu02g00282 386 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Tsu02g00282 386 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Tsu02g00282 386 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g00282 386 PANTHER UNKEMPT FAMILY MEMBER 10 378 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00282 Tsu-Chr2 2372833 2374157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00282 81 270 C2H2 Transcription Factor Family AT5G12850 52.284 2.04e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g00282 zf-CCCH 3.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00282 - - aprc:113867365 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00282 02 2372833 2374157 Tsu02g00282 02 2372833 2374157 ECH