Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00275 ATGATGAATAAGATGAGCAACGTTAGTAGCTCTGATCTCATAGATTCTAAGCTTGAAGAGCATCAGTTGTGTGGATCCAAACACTGTCCTCGCTGCGGACACAAGTTCGATCAAGGAAAGCCGGATTGGCTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGATCAAGAACTCATTGAACATCTTGAAGCTAAAGTTGAGTCAAAGAACATGAAATCACACCCTTTGATAGATGAATTCATTCTCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAAAAACTCCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCATAGACCATCAAAGGCATATACAACAggaacaagaaagagaagaaagattCAAACAGAAGAATGTGACTTACAAGGAACATCATCAGGAGGAGAAACAAGATGGCATAAAACTGGTAAGACAAGACCTGTTATggttaatggaaaacaaaaaGGCTGCAAGAAAATTCTTGTCCTCTATACAAATTTCGGGAAGAATCGAAAACCGGAGAAGACGAATTGGGTGATGCATCAGTATCATTTAGGACAAcatgaagaagagaaagaaggagAACTTGTTGTTTCAAAGATATTTTATCAGACACAACCAAGACAGTGTAATTGGTctgataataataatcatagAATTGGTGCAACAACAACATTAACTGGTGAAGGAAGTGGTGGAGGAGAAGCTAATAATAATTATGGAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCTAAGGAAATTGTTACTCATAATCATAGTACTCATAGTCACATTCATAGAGATGAAATGTCTGCTGTTGTTGGTGTTAATCCTTTAACAAGTTTCACAAATGCCTTGGATATTCAACACCTTAAATCCGATCATTTCGGTTTCCTCCCGTTTCGAAAAAGCACCTTCGATGAGGTTGGAATAGGAGAGGGTTCTACAGCAAGAGAAATGCAAGCATCAGGAGGGTCATGTGATCAAGAACAACAGCAGCAGCATGTAGTAgtacatcatcatcatcatcaacaacagcaTCAAAGTCagcatcaacatcaacatcaacaacatgAGATTCATGCACACCAACAGATTAATGCAAACACAGCTTTCCATATAAGTAGGCCTTCAAATCCAATCTCAACTATTATATCTCCACCTCCACTTCACCATACATCCATCATCCTTGATGATAATGCTTATCATGTCTCAACAATCATGCTtcaacaaaatgaaaattttcagcaacaacaacaacatcataaaCTAAGTGGTGGTGGAAGGTCTGCGTCTGGTTTAGAGGAAGTCATTATGGGGTGCACTTCAACATCGTCTGATACTATCAAAGAGGAGTCATCTATTAGAAATCAACAAGAAGCTGAGTGGTTAAAATACTCTTCTTACTGGCCAGTTGACCCTCATGACAACCCCAACCATCATCATGGTtag 1479 0.3489 MMNKMSNVSSSDLIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGTSSGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDNNNHRIGATTTLTGEGSGGGEANNNYGRRDSGSGSSSSKEIVTHNHSTHSHIHRDEMSAVVGVNPLTSFTNALDIQHLKSDHFGFLPFRKSTFDEVGIGEGSTAREMQASGGSCDQEQQQQHVVVHHHHHQQQHQSQHQHQHQQHEIHAHQQINANTAFHISRPSNPISTIISPPPLHHTSIILDDNAYHVSTIMLQQNENFQQQQQHHKLSGGGRSASGLEEVIMGCTSTSSDTIKEESSIRNQQEAEWLKYSSYWPVDPHDNPNHHHG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00275 492 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 466 IPR044799 GO:0003700
Tsu02g00275 492 Pfam No apical meristem (NAM) protein 47 193 IPR003441 GO:0003677|GO:0006355
Tsu02g00275 492 Gene3D NAC domain 55 216 IPR036093 GO:0003677|GO:0006355
Tsu02g00275 492 ProSiteProfiles NAC domain profile. 46 212 IPR003441 GO:0003677|GO:0006355
Tsu02g00275 492 MobiDBLite consensus disorder prediction 231 276 - -
Tsu02g00275 492 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 3 466 - -
Tsu02g00275 492 MobiDBLite consensus disorder prediction 231 265 - -
Tsu02g00275 492 SUPERFAMILY NAC domain 42 212 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00275 Tsu-Chr2 2298901 2305009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00275 9 488 NAC Transcription Factor Family AT5G56620 48.594 5.05e-131 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu02g00275 NAM 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00275 - - mtr:MTR_8g102240 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00275 02 2298901 2305009 Tsu02g00275 02 2298901 2305009 ECH