Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00272 ATGCAGAAAACCATGATTCTATCTTTTCTCCACATCCTTCTTCTCCTCTTTCCAAATGCAGCAAAAGCTTCCATTGGTATAGGCATTGGTGTTGGCATTGGCATTGGAAATGGTGGTGCTGGTGCTAACACACCATTGCCTTCAAGATCAAATCTAAATAATGCTTACACAGCTCTTCAAGCTTGGAAATCTTCAATCACTGATGACCCTTTGAAGATTTTAGACACATGGATTGGTCCTAATGTTTGTTCTTATAAAGGAATCTTTTGTGATACTAGTGACACTCCTTTTGTTGCAGGAATAGATCTCAACCATGCAAATCTTCAAGGAACACTTGTAAAAGAACTCTCTTTACTATCTGATATAACACTTATCCATCTCAACAGTAACAAATTTTCTGGTACAGTTCCTGATACATTCAAAGACTTTACATTTCTTCAAGAACTAGACTTAAGCAATAACCAACTTTCAGGTTCTTTCCCTACAGTTACTTTAGACATGCCAAGTTTAATTTACTTGGATCTTAGATTCAATAACTTCAAAGGGTCACTTCCTGAAGAACTTTTCAATAAGAAACTAGATGCAATATTTCTCAACAACAATCAATTTAGTGGTGAAATTCCACAAAGCATTGGTAACTCTCCTGCATCAGTGATTAATTTAGCCAATAACAAATTAAGTGGAAACATACCAGCAAGTTTTGGTTTTATGAGTTCTAAGCTAAAAGAGattctttttcttaataatcAGTTAACAGGTTGTATTCCTCAAGGTGTTGGTATATTCACAGAAATGCAGGTTCTTGATGTGAGTTTTAATTCACTTGTAGGTCATTTGCCAGATACAATATCTTGTTTGCAAGATATTGAGGTTCTTAATTTAGGACATAACAAGCTTTCTGGTGATATATCTGATGTGATATGTTCTTTGAGAAACTTGTTGAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAAGAATGTTCAAGGCTTTTCAATATTGGTTTTGATTTTACAGATAATTGTATTCCTGGTAAGAATATGCAGAGACCTTCACCTGAGTGTTCTGTGATCCCTGATGTTAATTTGAATTGTCTTAGAATTCCCACTCCAAAACCTCTTGTTTGTGGTACATTGGCTTCAGGAGCTTATAATTCTAAGTACACAAATATTCATTCATCATCTCCCTGA 1197 0.3442 MQKTMILSFLHILLLLFPNAAKASIGIGIGVGIGIGNGGAGANTPLPSRSNLNNAYTALQAWKSSITDDPLKILDTWIGPNVCSYKGIFCDTSDTPFVAGIDLNHANLQGTLVKELSLLSDITLIHLNSNKFSGTVPDTFKDFTFLQELDLSNNQLSGSFPTVTLDMPSLIYLDLRFNNFKGSLPEELFNKKLDAIFLNNNQFSGEIPQSIGNSPASVINLANNKLSGNIPASFGFMSSKLKEILFLNNQLTGCIPQGVGIFTEMQVLDVSFNSLVGHLPDTISCLQDIEVLNLGHNKLSGDISDVICSLRNLLNLTVAYNFFSGFSQECSRLFNIGFDFTDNCIPGKNMQRPSPECSVIPDVNLNCLRIPTPKPLVCGTLASGAYNSKYTNIHSSSP 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00272 398 SUPERFAMILY L domain-like 54 335 - -
Tsu02g00272 398 Pfam Leucine rich repeat N-terminal domain 53 91 IPR013210 -
Tsu02g00272 398 PANTHER LRR/EXTENSIN 1 388 - -
Tsu02g00272 398 Gene3D Ribonuclease Inhibitor 218 366 IPR032675 -
Tsu02g00272 398 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 388 - -
Tsu02g00272 398 Gene3D Ribonuclease Inhibitor 53 217 IPR032675 -
Tsu02g00272 398 Pfam Leucine rich repeat 123 180 IPR001611 GO:0005515
Tsu02g00272 398 PRINTS Leucine-rich repeat signature 146 159 - -
Tsu02g00272 398 PRINTS Leucine-rich repeat signature 286 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00272 Tsu-Chr2 2287139 2288576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00272 51 360 Leucine-rich Repeat extension Gene Families AT3G24480 51.592 3.41e-104 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00272 - - gmx:100820611 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00272 02 2287139 2288576 Tsu02g00272 02 2287139 2288576 ECH