Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00271 ATGTACTTTGAGGATGTATCTCCCGAAAATGATTCGGAATACCTATCTTTTTCAAGGGATCTCATTTCATCTTTAAGTGTTGGAAAGAAATGTAAGTCCAATGGTCAGAACTTACAATCTCCGTGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCGGCTAAAACTTATCATCGCAAACATAGAGTTTGTGAAATTCATTCCAAATCTCCTAAGGTGGTTGTAGCTGGTTTGGAAAGTCGTTTTTGCCAGCAATGTAGCAAGTTCCATGATCTGtttgaatttgatgaagaaaAGAGAAGCTGCAGACGACGTCTTTCACATCCCAATGCAAGGTGTCGTAAATATTGTCCTTCTGATGCTGTCCAGTCAAGTAAATCAGCTTTGACTTCCTCACGACGTGATGGGAAGCAACAGATGAAACCGTTTGCTTATTCAaaaactgataaaaatttagcCTTGCAAAACAAACACAACAGCAAGTTCCCCCAAACAAAAGATTTTCTCTTGAAGCCTTCAAAATACAACAGTGACATACCAAGTTCCCTCACTATGCTTTCTGATGATTCCAATGTCAAAAATTTTACTTGCAAAGCCCTTGAAACCAAGAGAATCAGTCCAGAACATTCTCATCGCGATACCAGTAATGCTCAAGCCATAACGCATGCAATGAATCTGCGCATGCCTCTTGCTTCATCAGAATCATGTCTGGTTTTCACCAGATGGATTAACATGAATGTTCTTATCCCAAATAGTTTCAACATAACAAATTTACATACAAGTTCTGGTGGTATCATGTCGAAACGGAAGCAGTTCTGGAAACATTCAACTGCATTTTCagagtga 849 0.3816 MYFEDVSPENDSEYLSFSRDLISSLSVGKKCKSNGQNLQSPCCQVEGCGLDLSSAKTYHRKHRVCEIHSKSPKVVVAGLESRFCQQCSKFHDLFEFDEEKRSCRRRLSHPNARCRKYCPSDAVQSSKSALTSSRRDGKQQMKPFAYSKTDKNLALQNKHNSKFPQTKDFLLKPSKYNSDIPSSLTMLSDDSNVKNFTCKALETKRISPEHSHRDTSNAQAITHAMNLRMPLASSESCLVFTRWINMNVLIPNSFNITNLHTSSGGIMSKRKQFWKHSTAFSE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00271 282 Gene3D - 33 104 IPR036893 GO:0003677|GO:0005634
Tsu02g00271 282 ProSiteProfiles Zinc finger SBP-type profile. 40 117 IPR004333 GO:0003677
Tsu02g00271 282 SUPERFAMILY SBT domain 41 121 IPR036893 GO:0003677|GO:0005634
Tsu02g00271 282 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 227 IPR044817 GO:0003677
Tsu02g00271 282 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 1 227 - -
Tsu02g00271 282 Pfam SBP domain 43 116 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00271 Tsu-Chr2 2284797 2285929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00271 2 180 SBP-box Gene Family AT1G27370 45.556 1.23e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu02g00271 SBP 5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00271 - - mtr:MTR_8g080670 248.44