Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00250 ATGGCAGAACTTCCCTGTGACCCAGAAGGTATTTGCATGGTTTGCAAACAGAAGCCTCTTGAAACTGAAACTCTTGTTTGCAGAACATGCGTAACTCCATGGCACGTTCCATGTCTTCCTCTTGTTCGAACTACTATCCTTGATTGGGAATGTTCCGATTGTTCTCAACCCGTTGATAATATCAATCACGTCGCCGATGTACCTGCTCCGCCTATCGCTGGCGATCTTGTTTCCGCCATTCGCGCCATCGAGAACGATAATTCGCTTACTGATGAACAAAAAGCGAAGAAACGTCAGGAACTTGTTGGCGGATCTTCTAAATCAACTACTGAAACTATCAATAGACGCAGTAATGGTTTGCTTGATCTCTTCGATGGTAGCGTTAACTGTTCCTTTTGCATGCAATTGCCTGAGAGACCTGTCACTacACCTTGTGGGCACAATTTTTGTCTGAAGTGTTTTGAGAAATGGATCAACCAAGGAAAACGAACTTGCGCGAATTGTAGGGCTGCAATTCCGGCCAAGATGGCGAGTAATCCACGAATTAACTCACAGTTGGCGACCGGGATTCGTATGGCAAAGCTCGCAAGATCGGAGGGTGATGGAGGAAGCGGTGTTCCGAAAGTTTATCACACTGTTGACAATGATGAGCGTCCTGACACTGCTTTCACCACTGAGAGAGCAAAGAAAACTGGAAAGTCTAATGCCTGTAGTGGGAAAATATTTGTGACAGTTCCAAAAGATCATTTTGGACCGATTTCTGCTGAGAATGATCCAACAAGGAACCGCGGGGTTCTTGTTGGTGATACATGGGAGGATAGGATGGAATGTAGGCAATGGGGTGCTCATTTTCCTCATGTTGCTGGGATTGCTGGTCAGAGTACGTACGGTGCTCAGTCTGTTGCTCTTTCTGGAGGTTATGTTGACGATGAGGATCACGGTGAGTGGTTCCTTTACACAGGAAGTGGTGGAAGGGATCTTAGTGGCAACAAAAGGACCAATAAAAATCAGTCATTTGACCAACAGTTTGAGAACATGAATGAGGCTTTGAGACTCAGTTGTCGAAAAGGTTATCCTGTTCGTGTTGTTAGGTCCCACAAGGAGAAACGTTCCTCTTATGCACCCGAAGCAGGAGTGAGATACGATGGGGTTTATAGAATTGAGAAATGCTGGCGCAAAATTGGAATACAAGGTCATAAGGTTTGCAGGTATTTGTTTGTGAGGTGTGACAATGAGGCAGCTCCATGGACAAGTGATTTTTCCGGAGACCGTCCCCGGACACTACCTATAATTGAGGAGCTTAAGGATGCAGTTGATGTTACTGAAAGAAAGGGTGATCCATCATGGGATTTTGATGAGGAAAAGGGCTGCTGGTTGTGGAAGAAGCCTCCACCACTAAGTAAGAAGCCGGTTAACGTTGTGAATCCTATAGATGGAAGTAAAATAAAAGTTGTTAGGCCAAAAGCAAAAAAGGTGTCCCTCAAAATCAAGGATAAGCTATTGAAAGAGTTTGGTTGCAATATATGTCGCAAGGTGTTGGCTTCCCCTCTTACTACACCTTGTGCTCACAACTTCTGCAAAGCCTGCTTGGAGGGTGCCTTTTCTGGCCAAAGTTATATCAGGAATAGAACAACCCAAAGCGGACGCTCTTTGCGGACACAGAAGAACATTATGAAATGCCCTAATTGCTCAACTGACATAGCTGATTATCTTCAGAATCCCCAGGTTAACAGGGAACTGATGGGTATCATAGAATCACTCCAACGACAGGCTGAACAGATGGAGGAGAGTTCTGAAGAATCAAGTGCTAAAAGTGAAGAATCAAGTGATAAAAGTGATGAAAATCTCAAGTCGGATGAGGAGACAGAGGTTCCGAAGCCCTGTGATTCAAGTGAAAAAGTCTCGGACGAAACTAAGGAGAATGATGTGGATCCTCCACAGAAGCGGATGAAAGGTGCTGATGGTAAGGCTGTGGTGAACGCGGATGAACATATTGATGGGGCAGAAGCAGAAGCAGAAAGCAAATCAATGGCTTTCAATTAG 2043 0.4488 MAELPCDPEGICMVCKQKPLETETLVCRTCVTPWHVPCLPLVRTTILDWECSDCSQPVDNINHVADVPAPPIAGDLVSAIRAIENDNSLTDEQKAKKRQELVGGSSKSTTETINRRSNGLLDLFDGSVNCSFCMQLPERPVTTPCGHNFCLKCFEKWINQGKRTCANCRAAIPAKMASNPRINSQLATGIRMAKLARSEGDGGSGVPKVYHTVDNDERPDTAFTTERAKKTGKSNACSGKIFVTVPKDHFGPISAENDPTRNRGVLVGDTWEDRMECRQWGAHFPHVAGIAGQSTYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQQFENMNEALRLSCRKGYPVRVVRSHKEKRSSYAPEAGVRYDGVYRIEKCWRKIGIQGHKVCRYLFVRCDNEAAPWTSDFSGDRPRTLPIIEELKDAVDVTERKGDPSWDFDEEKGCWLWKKPPPLSKKPVNVVNPIDGSKIKVVRPKAKKVSLKIKDKLLKEFGCNICRKVLASPLTTPCAHNFCKACLEGAFSGQSYIRNRTTQSGRSLRTQKNIMKCPNCSTDIADYLQNPQVNRELMGIIESLQRQAEQMEESSEESSAKSEESSDKSDENLKSDEETEVPKPCDSSEKVSDETKENDVDPPQKRMKGADGKAVVNADEHIDGAEAEAESKSMAFN 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00250 680 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
Tsu02g00250 680 SUPERFAMILY PUA domain-like 234 430 IPR015947 -
Tsu02g00250 680 ProSiteProfiles Zinc finger RING-type profile. 130 169 IPR001841 -
Tsu02g00250 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 195 IPR013083 -
Tsu02g00250 680 Coils Coil 577 607 - -
Tsu02g00250 680 ProSiteProfiles Zinc finger RING-type profile. 506 564 IPR001841 -
Tsu02g00250 680 MobiDBLite consensus disorder prediction 588 680 - -
Tsu02g00250 680 Pfam RING-type zinc-finger 506 547 IPR027370 -
Tsu02g00250 680 SMART PHD_3 11 55 IPR001965 -
Tsu02g00250 680 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 664 - -
Tsu02g00250 680 SMART ring_2 130 168 IPR001841 -
Tsu02g00250 680 SMART ring_2 506 563 IPR001841 -
Tsu02g00250 680 MobiDBLite consensus disorder prediction 592 671 - -
Tsu02g00250 680 Pfam SAD/SRA domain 263 411 IPR003105 -
Tsu02g00250 680 ProSitePatterns Zinc finger PHD-type signature. 12 54 IPR019786 -
Tsu02g00250 680 ProSitePatterns Zinc finger RING-type signature. 521 530 IPR017907 -
Tsu02g00250 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 65 IPR013083 -
Tsu02g00250 680 CDD RING-HC 130 168 - -
Tsu02g00250 680 SUPERFAMILY RING/U-box 122 176 - -
Tsu02g00250 680 SUPERFAMILY RING/U-box 498 589 - -
Tsu02g00250 680 MobiDBLite consensus disorder prediction 91 110 - -
Tsu02g00250 680 SMART G9a_1 255 412 IPR003105 -
Tsu02g00250 680 ProSiteProfiles YDG domain profile. 260 408 IPR003105 -
Tsu02g00250 680 Gene3D - 231 428 IPR036987 -
Tsu02g00250 680 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 664 IPR045134 -
Tsu02g00250 680 Pfam Zinc finger, C3HC4 type (RING finger) 130 168 IPR018957 GO:0046872
Tsu02g00250 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 486 613 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00250 Tsu-Chr2 2105760 2116494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00250 3 597 C2H2 Transcription Factor Family AT5G39550 58.949 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00250 K10638 - gmx:100786796 952.199