Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00239 ATGGGTGAGTGTGATATGATACCTCAACTTATTATTAGTAGCTCAGAGACTAAAACTACTTCATCTTCGGAGCTCCATTTACCCGACCCGGTTGAAAAGAGACCCAAACGACAAAGAGAAAGTAACCACCCGGTTTACAGAGGAGTTCGAATGCGGGCATGGGGAAAATGGGTATCCGAAATCCGCGAGCCAAGAAAGAAGAATCGGATCTGGCTTGGAACCTTCGCAACGCCGGAGATGGCAGCTCGAGCTCATGACGTGGCAGCTCTCGCCATTAAAGGTAGTTCAGCTATCCTCAACTTCCCTGAACTCGCTGGTTCAATGCCCCGACCCGATTCAAACTCTCCTCGTGATGTTCAAGCCGCCGCTGTCAAAGCCGCTGCAATGGAATTTCCCGATCAACAACAAACATCAAcaacttcttcatcttctccatcaCCGTCGTCTTCTTCGTCATCGTCATCTCTTTCACTGTCGCAATCTTCATCGTCTTGTTCATTGGCGGTTTCATCTTCCGATGAACCGTCAACACCAGATGACCTAGGTGAAATAGTGGAACTACCAGCATTGGGAACGAGTTTTGAATTACCCGACCCGAACAATATGATATTTTCCGACCCGGTTGATGGATCATGGACTTGGTATAATAGTCACAGCATTTACGATGAAAGGGATTATTTTAAGGAGTTGGATCAGATATCTATGCATGAAGACAATTCTGCAAGTATTACTAGTACGATTCTTTGTGGTTATGAGGGTTCTTTGTGGCAGCATTAG 777 0.4479 MGECDMIPQLIISSSETKTTSSSELHLPDPVEKRPKRQRESNHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGSSAILNFPELAGSMPRPDSNSPRDVQAAAVKAAAMEFPDQQQTSTTSSSSPSPSSSSSSSSLSLSQSSSSCSLAVSSSDEPSTPDDLGEIVELPALGTSFELPDPNNMIFSDPVDGSWTWYNSHSIYDERDYFKELDQISMHEDNSASITSTILCGYEGSLWQH 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00239 258 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Tsu02g00239 258 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Tsu02g00239 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 245 - -
Tsu02g00239 258 MobiDBLite consensus disorder prediction 131 159 - -
Tsu02g00239 258 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 245 - -
Tsu02g00239 258 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Tsu02g00239 258 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Tsu02g00239 258 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Tsu02g00239 258 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Tsu02g00239 258 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Tsu02g00239 258 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Tsu02g00239 258 MobiDBLite consensus disorder prediction 10 26 - -
Tsu02g00239 258 MobiDBLite consensus disorder prediction 1 44 - -
Tsu02g00239 258 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00239 Tsu-Chr2 2036432 2037595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00239 5 209 AP2-EREBP Transcription Factor Family AT5G11590 52.607 2.15e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g00239 AP2 5.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00239 K09286 - gmx:100778201 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00239 02 2036432 2037595 Tsu02g00239 02 2036432 2037595 ECH
Tsu02g00239 02 2036432 2037595 Tsu03g03438 03 47351109 47351811 PCT