Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00221 ATGTCTGTGCCAGTGGAACAAGGTGGTTATGGTGGTTGTTTGAAAGAGATTCCTTCTTCAATGGAAACTAACATTGGATTGAACCTCAAAGCTACTGAACTGAGACTTGGGTTACCAGGCTCTGAATCTCCTGAGAGAGAAAATGGTGGTGGGTTGTCTATGCTTAAGAGTTTGGTGTCTGGTGCTAAAAGGGGTTTCTCTGATGCTATTGATAGTGGTTCTGGTAAATGGGTTTTGTCTGGAAATGGTGGATCTGAAGTGGGTTTGTGTAAAGATGGAAACTTGTTCTCTCCTAAAGCTAAAGGTGGTGTTGGTGAATGTAACAAACAACAAAACCCTTTCTCTGCTGCTTCAGTTGTTAAAGAAACTGTTCCTCACTCTCCAAAGCCTTTGCATGATAACAAACCACAGATTTCTTCTGCTCCTTCTGCAAAGGCGCAAGTTGTAGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCTTCTCCGCCTCAAAAGAATGATGCTGATGCCGAAGCCAAATCTGAATGCCTCTATGTAAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTGAATGGTTTTAGCTCTTATAGGGAACTTTCTTCAGCACTCGAAAAGATGTTCAGTTGTTTTACAATCAGTCAATGTGGCTCATATGGAGTTTCttgtcaagaaaaaaatttaagtgaAAGTAGATTGGTGGATCTTCTTCATGGTTCGGAATATGTGCTTACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAaaTGTTCACCGAGTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCTCGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 903 0.4175 MSVPVEQGGYGGCLKEIPSSMETNIGLNLKATELRLGLPGSESPERENGGGLSMLKSLVSGAKRGFSDAIDSGSGKWVLSGNGGSEVGLCKDGNLFSPKAKGGVGECNKQQNPFSAASVVKETVPHSPKPLHDNKPQISSAPSAKAQVVGWPPIRSFRKNSMASPPQKNDADAEAKSECLYVKVSMEGAPYLRKVDLNGFSSYRELSSALEKMFSCFTISQCGSYGVSCQEKNLSESRLVDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAMEKCKSRN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00221 300 PANTHER AUXIN-INDUCED PROTEIN 19 293 - -
Tsu02g00221 300 Gene3D - 173 294 - -
Tsu02g00221 300 ProSiteProfiles PB1 domain profile. 179 282 IPR000270 GO:0005515
Tsu02g00221 300 MobiDBLite consensus disorder prediction 118 144 - -
Tsu02g00221 300 SUPERFAMILY CAD & PB1 domains 177 281 - -
Tsu02g00221 300 Pfam AUX/IAA family 32 291 IPR033389 -
Tsu02g00221 300 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 293 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00221 Tsu-Chr2 1917686 1920464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00221 129 290 B3 DNA Binding Superfamily AT4G23980 27.160 1.15e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu02g00221 AUX_IAA 3.4e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00221 K14484 - gmx:100803754 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00221 02 1917686 1920464 Tsu02g00221 02 1917686 1920464 ECH
Tsu02g00221 02 1917686 1920464 Tsu03g03392 03 46766048 46769984 PCT