Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00217 atGAATAGAGGTGTTAATCTTCAAAGCTCACCAGTGCAACAAATTATGATGGCTGGAAACCCTAACAACTGGTGGAACACCATGCGCCCTCCTACACCTGATAATCATCACCAACCTTTCTTCTCCAccattactactactactagtcCTTCTCCTTCTAATTACTTTGTACCTCCATATCCTACTTCTCTTCCTCTTCCTTCTTGGCATGAAAATCAAGATCAACTTCCTGAGTCATGGAGTCACCTACTCATGAGTGGTGGGGTGGTGTATGAAGAAGATAAGGAACAAATTATGCTAAGTCAGCCTCTTTCAAATGCTTCTTCTCTTGTTGATCATGTTAAACAAGAAACTTCAGTGAACAACTATGTTTATGGAAATGAAGAATTTCATGGAACAACAAATTCTAGTACTTGGTCTCAAATAGTGTCGGTGCCTTCTTCTTCTGCCTCCAAATCTAGCATGTTGGATTTttctaacaataaatttgatacaAGATCTCCACCATCAGATCCATCTTCTGATCAGtGCAATAGTGGTGCAAGTGGTGGGGCATTGAAGAAAGCTAGGGTTCAACCATCTACAACTCAGCCCACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGATAGAATTACTGCCCTTCATCAACTCGTTTCCCCATTTGGAAagACTGACACAGCATCTGTCTTATTAGAATCAATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCACTTAGTTTACCATACTTGGGAAATGGATCAGTAGGAGGGAACATGaagaaccaacaacaacaatatGTTCAAGGAGAGAAGAATTGTTTTTTCCCTGAACACCCTGGTCAGCTGCTGAATGAAAACTGTTTGAAGAGAAAGGCTTGTGAGCAGGattgtgaagaagaagaaaagaaggaCTTGAGGAGTAGAGGATTATGTTTGGTTCCAGTTTCATGCACACTACACGTTGGAAGTGACAATGGAGCTGATTATTGGAATCCTGCTTTTGGTGGTGGATATCAGTAG 1026 0.3801 MNRGVNLQSSPVQQIMMAGNPNNWWNTMRPPTPDNHHQPFFSTITTTTSPSPSNYFVPPYPTSLPLPSWHENQDQLPESWSHLLMSGGVVYEEDKEQIMLSQPLSNASSLVDHVKQETSVNNYVYGNEEFHGTTNSSTWSQIVSVPSSSASKSSMLDFSNNKFDTRSPPSDPSSDQCNSGASGGALKKARVQPSTTQPTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLESIGYIRFLQSQIEALSLPYLGNGSVGGNMKNQQQQYVQGEKNCFFPEHPGQLLNENCLKRKACEQDCEEEEKKDLRSRGLCLVPVSCTLHVGSDNGADYWNPAFGGGYQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00217 341 MobiDBLite consensus disorder prediction 159 200 - -
Tsu02g00217 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 327 - -
Tsu02g00217 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Tsu02g00217 341 Gene3D - 199 250 IPR036638 GO:0046983
Tsu02g00217 341 MobiDBLite consensus disorder prediction 159 181 - -
Tsu02g00217 341 PANTHER OS05G0228400 PROTEIN 17 327 - -
Tsu02g00217 341 CDD bHLH_AtbHLH_like 198 248 IPR045239 -
Tsu02g00217 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 201 251 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00217 Tsu-Chr2 1874790 1878860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00217 1 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 40.782 7.88e-54 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00217 - - gmx:100785156 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00217 02 1874790 1878860 Tsu02g00217 02 1874790 1878860 ECH
Tsu02g00217 02 1874790 1878860 Tsu03g03388 03 46682767 46689554 PCT