Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00216 ATGTTCTTCTTTGTGCTTCTTTCTAGGGTGGTACATTTGTTTGCTTTCGGGTTATTTGGGTTTCATCTCTTGGAACAGAGACCAGAAGATTTGGAGAGTTCTGAAGAGTTTTTTGATTTGGAGTCTTTATCTTATTCTTCAGAAGATTTCTTTCGTGTTTTGGCTCAGTTGTCGGAAGAAGAGTTTCTTTCGGGTGGTACATTTGTTTGCTTTCGGGTTATTTGGGTTTCATCTTTTGGTAAATTTCTATGTTATAAGGTTGATTATAAGGTTGTTATTGTTGGATTCAAAGCTAGgTTGATTATAAGGTTGTTATGGTTGGATTCAAAGCTAGGTAGTATTGGGGTTGTTGTTGGTCAGAATATCCTCAATGTGCTTCTTTATAGGGTGGTACATTTGTTTGCTTTCGGGTTATTTGGGTTTCATCTCTTGGAACAGAGACCAGAAGATTTGGAGAGTTCTGAAGAGTTTTTAGATTTGGAGTCTTTATCTTATTCTTCAGAAGATTTCTTTCCTGCTTTGGCTCAGTTGTCGGAAGAAGAGTTTCTTTCGAGGTTAATTGGTAGGAAGTTTAGTGATTCTGTTGTTCAAGATGATATGATTGTGTGGCCATTCATGGTGGTTTCCGGAGTTGAGGACAAACCGATGATATCTGTTAAGTACAAGGGACAAGAGAAACACCTATGTGCCGAAGAAATTTCATCTATGATTCTAACAAAGATGCGTGAGATTGCAGAGATTTTTTTGGAATCACCTGTCAAAAATGCAGTTATTACTGTGTCGGCTTATTTCAATGATTATCAGCGGAAAGCCACCATAGATGCTGGTGCTATTGCTGAAGAAGAACAAGATGGACATTACATTACCGGAGACCCAAGAGCCTTAAGGAGGTTGAGAACAGCGTGCGAGAGAGCAAAAAGGATACTATCTTTTTCTGTTGTCTCCACCATTGAGATCGATTCTTTATTTAATGGCATTGATTTCTTTTCATCAATCACTCGTGCTAAGTTTGAGGAAATCAATATGGATCTTTTCAATGAGTGTTTGAATATTGTCGATAGTTGTCTCACTGATGCCAAAATGGACAAGAGCGATATACATGATGTTGTTCTTGTTGGCGGCTCCTCTAGAATTCCAAAAGTACAACAACTCTTGCAGGAATTTTTTCCAGGGAAGGATCTGTGTAAGAGCATTAACCCTGATGAAACTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTTTGTTGAGCAAAGGCTTTAAAAATGTTCCAAACTTGGTTATGCAAGATGTTGCACCTTTGTTTCTCGCTTATGATAACCAAGCCAATGTTGCTATTGATGTTTATGAGGGTGAGAGAGCAAGAATAAGTGACAACAATCTGCTTGGTTCTTCTGTTCTTTCTGGCCTCCTACTTGCTCCTCGAGGTCACCCTCTAGAGGTATGTTTTGCCATTGATAAAAATGGTGTCTTAATTGTTTCTGCTAATGAAAAGTCAACTGGCAGTAAGAAGGAgataataataactaataacaAAGAAAGATTGTCATCtcaagaaattaaagaaaagatCAGAGAAGCTGAAAAGTACCGCgttgaagatgaaaaatttcTAAGGAGGGCCAAACTATTGAATGAATTAGATGACTGCGTTTACAAGTTGAGGAACACTCTCTCTTCTGAAGAAAATGACAAGATCAACTCTGCAATTAAGGCGGCCACAAATTTTCTTGGCAGTAAGCAGCATAGTGAAATACATGTTCTTGAAAATTCATCTAAAGGAGCTTGA 1785 0.3754 MFFFVLLSRVVHLFAFGLFGFHLLEQRPEDLESSEEFFDLESLSYSSEDFFRVLAQLSEEEFLSGGTFVCFRVIWVSSFGKFLCYKVDYKVVIVGFKARLIIRLLWLDSKLGSIGVVVGQNILNVLLYRVVHLFAFGLFGFHLLEQRPEDLESSEEFLDLESLSYSSEDFFPALAQLSEEEFLSRLIGRKFSDSVVQDDMIVWPFMVVSGVEDKPMISVKYKGQEKHLCAEEISSMILTKMREIAEIFLESPVKNAVITVSAYFNDYQRKATIDAGAIAEEEQDGHYITGDPRALRRLRTACERAKRILSFSVVSTIEIDSLFNGIDFFSSITRAKFEEINMDLFNECLNIVDSCLTDAKMDKSDIHDVVLVGGSSRIPKVQQLLQEFFPGKDLCKSINPDETVAYGAAVQAALLSKGFKNVPNLVMQDVAPLFLAYDNQANVAIDVYEGERARISDNNLLGSSVLSGLLLAPRGHPLEVCFAIDKNGVLIVSANEKSTGSKKEIIITNNKERLSSQEIKEKIREAEKYRVEDEKFLRRAKLLNELDDCVYKLRNTLSSEENDKINSAIKAATNFLGSKQHSEIHVLENSSKGA 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00216 594 SUPERFAMILY Actin-like ATPase domain 183 281 IPR043129 -
Tsu02g00216 594 PANTHER HEAT SHOCK PROTEIN 70KDA 184 279 IPR013126 GO:0005524|GO:0140662
Tsu02g00216 594 Gene3D Actin; Chain A, domain 4 282 347 - -
Tsu02g00216 594 PANTHER HEAT SHOCK 70 KDA PROTEIN 184 279 - -
Tsu02g00216 594 PANTHER HEAT SHOCK PROTEIN 70KDA 436 591 IPR013126 GO:0005524|GO:0140662
Tsu02g00216 594 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 421 568 IPR029047 -
Tsu02g00216 594 SUPERFAMILY Actin-like ATPase domain 285 415 IPR043129 -
Tsu02g00216 594 Gene3D - 184 236 - -
Tsu02g00216 594 Pfam Hsp70 protein 286 435 IPR013126 GO:0005524|GO:0140662
Tsu02g00216 594 Pfam Hsp70 protein 436 573 IPR013126 GO:0005524|GO:0140662
Tsu02g00216 594 Pfam Hsp70 protein 184 279 IPR013126 GO:0005524|GO:0140662
Tsu02g00216 594 Gene3D - 396 413 - -
Tsu02g00216 594 Gene3D - 237 280 - -
Tsu02g00216 594 ProSitePatterns Heat shock hsp70 proteins family signature 3. 369 383 IPR018181 -
Tsu02g00216 594 PANTHER HEAT SHOCK 70 KDA PROTEIN 436 591 - -
Tsu02g00216 594 PANTHER HEAT SHOCK PROTEIN 70KDA 287 435 IPR013126 GO:0005524|GO:0140662
Tsu02g00216 594 Gene3D - 348 395 - -
Tsu02g00216 594 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 422 547 IPR029047 -
Tsu02g00216 594 PANTHER HEAT SHOCK 70 KDA PROTEIN 287 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00216 Tsu-Chr2 1870546 1874282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00216 288 592 Calmodulin-binding Proteins AT3G12580 53.623 5.87e-112 347