Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00215 ATGGACACCGTAACCGTCACAACACGAGCTCAGATCCTCCGTCACATAACCGCATTCATCACCGGTGTAATTAATCAATCAGATCTTCGTCGCAGCCTCATTGAAACGCTCCACCGTGAAACTCCAATCTCCAATCAAGTAACCCTAAAACAACTCAACCTCGCTGCAGATGCTCTCGAAAGCGCCATTTCTTTCTCCAGTTCCGCCATTCgttcttcttctctctccctCGCCGAGAAGCTTCTCATTCCTCTTCCAGAGTATCCTCTCTCCTCTTTCCTCCTCTCCCTCATTCAAACCCTCCGTAACTGTCCCGACGATTCTGCAATAACTCTCCTCCGAATCTTCAATTCCAATCCTTCACTCGCCCGATCTGAAATAGCACCTTATCTCTACGAGCATCTCTTTTATCTTCACCTTTTCCCTGTTTTCCGGTGGTTTGATGAACAGAGAACGCGGATTTTGCCGTCAACTTCTGAAACCCCGAGCCGCGACACCGGTGACTACTCGGTTTCCGATGAGTTAATGGTTATGCCTTATGCTAAGTTGTTGTCGAGTGTGAGCGGTGATCAAGCGTCAAAGCTGAGGGAGTTGGAGAGAGAGTATGAAGAGGTTTTAGATGAGAATTGTAGGGTTCTTGCAGTGTATTTTAAAGAGGTTTTGGTGAATAAAGATGAAAATTCAACAATCAGTCCACCGTTGTTGATATTGAAAAGTGCCATAGAAGGTGGCCGCGGCAACGATGGTGGAGAGAACAGAAAGGAGGAAATGCAAATGCCTGTGATGGAGAACGGACGGTATAATCCAATGTGGTCCGAAAGGGATACGTCTATTGAATATTTGAGCAGCAGTTCCAGCAGTAGATCCTCCCAGGCACCATTATATCCTCAAAGAGTCTCTCCTGGAGTCCTCAACCCCCGAAAATCTTCAAATTATTGGACAACACCGGTCTATTTAAACTCAGCCACCGAAACTCAATTTTCTTTAGATAAGAATTCACTTTGTTCTTCTTCGGATTCTGAAGCTGAAAATGAGgaaaaagacaaaaatatagCATTGTTGGAGCCTCAACAAAGCCAAACCCAGGAACAAATGCAAGCCATCTTCAAAGAATCCAGGGgCTCCCCAGATTATCCAATGGCAGACTACGAAATTACACCCCCGCATGGAATTGAGAAGCAAACGCCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACATAGCTTGTCCTATCACTCGCCAGAATCTGCAAAACACCAAGCTACCTAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAACCCCAGTTCAGTCCTGCCAACATGTGAGATTCCATACAAAGATAACGAGGAAGAAGTAAAGACAACAATGCCTTCAGCTTCTCCTAACAGTGTCATAATGCAAGCCACCGTTGATGGGATGGTTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTcttcaaattgagaaattgtGGAGAGGAGGGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTGTGGAGATACTTTTCAATTCTGTTGAATCCCATGTGCTACAGGCAGCAGTTTTCCTTCTGTCTGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTCACACGTGTAGACACGGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATCTCCTAAACCCTTCCCCTGTGACTCTTACTGAGATGGCCATAGTGGAGTCCCTCATAGAAGTTTTTAGTAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCCACAACAGCTGCAGTTCTTCTACTGGCACATATTATTGGAAGCAGTGATGAGATAATTGCGTCTTCAGTTGTCAAGACTTTGTTCTCTGAAAAAGCCATTGGAGATATTGCTGGAAGTTTGGGAGCTGAATGGGCAGAGGAACGGATCGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGGACTTGCAGGAACACCATTGCCGATAAAGCAGAGCTGTCTCCTATTCTAGAAACCTTCATCTGTGCAACTGATGCGGAGCGTTTCAagattgttgaatttttttctgAATTGATCAAACTAAATAGGAGAACATTCAATGAACGGATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCAtacttttcttatttatttgcagACAGTCCTTCAAGATCAATGTCCAGTCATGGCCGGTCTTTTACTCCAACTTGATCTTCTGGTGGAACCAAGAAATATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAGGAACTCAGATTTCCCTACTGCCCAGTTAGCAGCTGCTAATACAATCATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTCCAGAAGAAGAGAAGGCGGCAGATGATTGGGAAAGAAAAATGGCATATGTTCTAGTTAGCCACGAGTTTGGTATAATTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAAAATTCCAGAACTACGTTCAGCGTGCTTTATATCAGCTACATGGCTCATAAACATGCTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTCTGTTTGCTTAAGCAGTttgtaaataaattaagttCTGCTAAGGGCATAGAACACAAAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGACGGTATACGTGATCTAACTGCTTCCTACGCAAAGGATATCTTAAAAGGTTTGAGAGAGCTAAAGAGATTCTCTCCTTTGGCATCTGAAATGCTGAAAGTTCTGGTTGATGAGAATGACTCTAAAACAGAAATTTGGAGACATAAAGAGCTAATCCAAGAAGATTGCAGAGAGAATGGAGAAGTGTTGTCTGTCATTTGCTTCAAGGATAAAATTATTTCCGGCCATACAGATGGAAGCATCAAGGTCTGGACATTAAAGGATAACTTATTACTTCTGTTGCAAGAGATCCAAGAACATGCAAAGGCTGTGACAAACTTGACGATTTCAGAATCTGGTGACAGACTTTACAGTGGTTCACTTGACCGAACTGCAAAGATCTGGTCTATTGGGAAGGAAGAAATATATTGTGAGCAGGTGCACGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCACAACTTGTTTCATTCCGCAGGGGACTGGTATCAAGGTGCAGTCATTGAATGGAGAATCCAAGTTGTTAAATTCTAATAAATATGTGAAGTGTTTGGCTCATGCACATGGAAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGACCACTGGAACTATCAGTAATATTCAAAGTGGTTATAAAAGATTACTTGGGAAAGCATATCCTATTCATGCAATGCAAATTCATGATGAACTTATATATGCAGCTGGCTCTTCCTTGGATGGAACTTCGATAAAGATATGGAACAATTCCAATTACAGTATGATTGGATCACTGCAAACTGGATCCGAAGTGCGGGCTATGGCAGTGAGTTCAGAATTAATTTATCTTGGGTGCAAGGGAGGTACTGTAGAAATTTGGGATAAGAAGAAACACATTAGAGTTGGCACATTACAGTTGGGTACAAATTGTAAGGTTAATTGCATGGCTCTAGGCAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCGTGGGAAATGAATTAA 4014 0.4153 MDTVTVTTRAQILRHITAFITGVINQSDLRRSLIETLHRETPISNQVTLKQLNLAADALESAISFSSSAIRSSSLSLAEKLLIPLPEYPLSSFLLSLIQTLRNCPDDSAITLLRIFNSNPSLARSEIAPYLYEHLFYLHLFPVFRWFDEQRTRILPSTSETPSRDTGDYSVSDELMVMPYAKLLSSVSGDQASKLRELEREYEEVLDENCRVLAVYFKEVLVNKDENSTISPPLLILKSAIEGGRGNDGGENRKEEMQMPVMENGRYNPMWSERDTSIEYLSSSSSSRSSQAPLYPQRVSPGVLNPRKSSNYWTTPVYLNSATETQFSLDKNSLCSSSDSEAENEEKDKNIALLEPQQSQTQEQMQAIFKESRGSPDYPMADYEITPPHGIEKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNIACPITRQNLQNTKLPKTNYVLKRLVASWKEHNPSSVLPTCEIPYKDNEEEVKTTMPSASPNSVIMQATVDGMVSELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVESHVLQAAVFLLSEMGSRDNAVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLNPSPVTLTEMAIVESLIEVFSKKEEDLVKMCLNPTTAAVLLLAHIIGSSDEIIASSVVKTLFSEKAIGDIAGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILETFICATDAERFKIVEFFSELIKLNRRTFNERILHIIKEEGPFSTMHTFLIYLQTVLQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDTLISCLRNSDFPTAQLAAANTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITPEEEKAADDWERKMAYVLVSHEFGIIFEALADGMKSKIPELRSACFISATWLINMLTILPDTGIQGAARVCLLKQFVNKLSSAKGIEHKILSMLALNSFLHFSDGIRDLTASYAKDILKGLRELKRFSPLASEMLKVLVDENDSKTEIWRHKELIQEDCRENGEVLSVICFKDKIISGHTDGSIKVWTLKDNLLLLLQEIQEHAKAVTNLTISESGDRLYSGSLDRTAKIWSIGKEEIYCEQVHDMKDQIHNLVVTNSTTCFIPQGTGIKVQSLNGESKLLNSNKYVKCLAHAHGRLYCGCHDSSVQEIHLTTGTISNIQSGYKRLLGKAYPIHAMQIHDELIYAAGSSLDGTSIKIWNNSNYSMIGSLQTGSEVRAMAVSSELIYLGCKGGTVEIWDKKKHIRVGTLQLGTNCKVNCMALGSNEEILVIGTSDGQIQAWEMN 1337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00215 1337 MobiDBLite consensus disorder prediction 282 301 - -
Tsu02g00215 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1336 - -
Tsu02g00215 1337 MobiDBLite consensus disorder prediction 282 296 - -
Tsu02g00215 1337 SMART WD40_4 1045 1082 IPR001680 GO:0005515
Tsu02g00215 1337 SMART WD40_4 1161 1204 IPR001680 GO:0005515
Tsu02g00215 1337 SMART WD40_4 1207 1253 IPR001680 GO:0005515
Tsu02g00215 1337 SMART WD40_4 1256 1292 IPR001680 GO:0005515
Tsu02g00215 1337 SMART WD40_4 1295 1335 IPR001680 GO:0005515
Tsu02g00215 1337 SMART WD40_4 1087 1126 IPR001680 GO:0005515
Tsu02g00215 1337 Pfam WD domain, G-beta repeat 1092 1126 IPR001680 GO:0005515
Tsu02g00215 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1303 1337 - -
Tsu02g00215 1337 SUPERFAMILY WD40 repeat-like 1066 1336 IPR036322 GO:0005515
Tsu02g00215 1337 ProSiteProfiles U-box domain profile. 395 470 IPR003613 GO:0004842|GO:0016567
Tsu02g00215 1337 Gene3D - 1137 1337 IPR015943 GO:0005515
Tsu02g00215 1337 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 1336 - -
Tsu02g00215 1337 MobiDBLite consensus disorder prediction 372 397 - -
Tsu02g00215 1337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 472 IPR013083 -
Tsu02g00215 1337 ProSitePatterns Trp-Asp (WD) repeats signature. 1322 1336 IPR019775 -
Tsu02g00215 1337 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1094 1127 - -
Tsu02g00215 1337 SUPERFAMILY ARM repeat 521 1039 IPR016024 -
Tsu02g00215 1337 Pfam U-box domain 397 467 IPR003613 GO:0004842|GO:0016567
Tsu02g00215 1337 Gene3D - 1019 1136 IPR015943 GO:0005515
Tsu02g00215 1337 Coils Coil 188 208 - -
Tsu02g00215 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1094 1127 IPR001680 GO:0005515
Tsu02g00215 1337 SUPERFAMILY RING/U-box 385 469 - -
Tsu02g00215 1337 SMART Ubox_2 399 463 IPR003613 GO:0004842|GO:0016567
Tsu02g00215 1337 CDD RING-Ubox_PUB 400 442 IPR045210 -
Tsu02g00215 1337 ProSiteProfiles Trp-Asp (WD) repeats profile. 1303 1337 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00215 Tsu-Chr2 1860229 1867223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00215 392 467 U-box Gene Family AT1G23030 48.052 1.48e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00215 - - gmx:100808867 1986.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00215 02 1860229 1867223 Tsu02g00215 02 1860229 1867223 ECH