Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00204 ATGCCATCTTCATTCTCTATCTCCCCATCACTCCCATCACTTCAAAACCCTAACTTGGACCATGCCCATTTCTTCAATCCCATCAAATTCCCCAATTTCCATTTCAATTCAACTAAACCACGCTCTCGCCCCAACTTCCCCCAACTCTACAAGACCTCTTCAACTCTACGCCATAGAATCCCCTGCAGTAAAGCTTTGAAAGATTCCGGTGGCGGTGGCGGCGGTGGAGATGGTGGTGGTGACCGTGAGGTGGAGAAGAAAAATGAATCTTTGGGTCCTTTTTcaaattggttgaatttcacTTCTGATGACGCCAAAACTGTGTTTGCTACTCTTGCAATATCGCTTGCATTTCGTACATTCATTGCTGAACCTAGGTTCATTCCTTCTTTGTCAATGTATCCTACCTATGATGTTGGAGATCGAATTGTTGCTGAAaagGTTTCGTACTATTTCAGAAAGCCGTGTGCAAATGATATTGTGATCTTTAAAAGCCCTCCTGTCCTTCAAGAAGTTGGATACACTGATAATGACGTTTTCATAAAACGTGTTGTTGCAAAGGAAGGAGATGTCGTAGAGGTTCGTAATGGGCATCTTGTAGTTAATGGGGTTGAGAGGGACGAGAAGTTTATCAATGAACCACTGAAGTATGAGATGAAACCAACACGTGTGCCAGAGAACTTCGTTTTTGTGATGGGAGACAACCGCAACAACAGCTACGACTCACATGTGTGGGGTCCTTTGCCAGCCAAGAATATCATTGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGGCAACACAGTTGCTAAGGGAGGGTGCCCCGTTGAAACCAAACCGGAGACGACgactactactactactctAGTATCTCAATGA 885 0.426 MPSSFSISPSLPSLQNPNLDHAHFFNPIKFPNFHFNSTKPRSRPNFPQLYKTSSTLRHRIPCSKALKDSGGGGGGGDGGGDREVEKKNESLGPFSNWLNFTSDDAKTVFATLAISLAFRTFIAEPRFIPSLSMYPTYDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDNDVFIKRVVAKEGDVVEVRNGHLVVNGVERDEKFINEPLKYEMKPTRVPENFVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGNTVAKGGCPVETKPETTTTTTTLVSQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00204 294 TIGRFAM sigpep_I_bact: signal peptidase I 106 264 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu02g00204 294 MobiDBLite consensus disorder prediction 63 86 - -
Tsu02g00204 294 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 85 272 - -
Tsu02g00204 294 CDD S26_SPase_I 124 256 IPR019533 GO:0004252|GO:0006465
Tsu02g00204 294 Gene3D Umud Fragment, subunit A 118 274 - -
Tsu02g00204 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 121 137 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu02g00204 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 180 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu02g00204 294 PRINTS Bacterial leader peptidase 1 (S26A) family signature 224 243 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu02g00204 294 Pfam Signal peptidase, peptidase S26 105 262 IPR019533 GO:0004252|GO:0006465
Tsu02g00204 294 SUPERFAMILY LexA/Signal peptidase 119 270 IPR036286 -
Tsu02g00204 294 PANTHER SIGNAL PEPTIDASE I 85 272 IPR000223 GO:0006508|GO:0008236|GO:0016020
Tsu02g00204 294 ProSitePatterns Signal peptidases I signature 3. 229 242 IPR019758 GO:0004252|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00204 Tsu-Chr2 1785378 1787935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00204 133 263 MADS-box Gene Family AT1G29960 33.333 8.86e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00204 K03100 - gmx:100815810 373.244