Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00194 ATGACTGATCTTAACTCAAGTAATGGCAACAACAGCTCCTTGTTCAAAATACCGACCATCAAGTATAACAAGCTCTTCATCAATGGAGATTTTGTCGATTCTGTATCAGGAGCAACATTTGAGACAATAGACCCAAGAACAGGAGATGTGATTGCAAGAATCAGTGAAGGAGCTAAGGAAGATATTGACATTGCAGTTAAAGCAGCACGCGAGGCATTTGACTCCGGTCCATGGCCTCGAATGTCTGGTGTTGAACGGGGGAAAATAATGATGAAATTTGCAGAACTAATTGAAGAAAACATAGAAGAATTAGCAGCATTAGATGCAGTTGATGCTGGAAAGTTGTACTCTATTGCCAAGGTTATGGAAATTCCTGGAGCAATAAGTATAGTGCGTTACTATGCAGGTGCTGCCGATAAAATTCATGGCGAGGTATTAAAAAGTTCTGGCCAATTCCACGCGTACACATTAATGGAACCGATTGGCGTTGTGGGACATATAATTCCATGGAATGCTCCCACTTCAATTTTCTTCACCAAAGTTGGTCCTTCTTTAGCTGTTGGGTGCACTATGGTGCTCAAACCTGCTGAACAAACACCTCTCTCTGCTTTGTTTTATGCCCATCTAGCTAAACTGGCTGGAATCCCGGATGGAGTGTTGAATGTAGTACCCGGATTTGGACCAACTGCTGGTGCTGCAATTAGCTCACATATGGACATAGATGTGGTTAGCTTTACTGGTTCAGTTGAAGTAGGTCGTGAAATAATGCATGCTGCAGCTAAGagtaatttaaaacatgttTCACTTGAATTAGGAGGCAAGTCACCTCTTCTTATTTTCGATGATGCTGATGTTGACAAAGCTGCTGACCTTGCAATTCTCGGTATCCTAGCTAACAAGGGAGAAGTTTGTTGTGCTAGTTCCCGTGTGTTTGTTCAAGAAGGGATCTACGATCAAGTTGAGAAGAAGTTAGTGGAGAAGGCAAAAGCTTGGATCGTCGGGGATCCTTTTGATCCTAAAACTCAGCAAGGACCTCAGGCTGATAAGAAccaattagaaaaaattatatcCTACATTGAGCATGGAAAGAGAGAAGGAGCTACACTCTTGACTGGAGGTAGAAGATTGGGAAGTGAAGGCTACTACATTGAACCTACAATTTTCTCCAATGTTAAGGAGGACATGCTTATAGCAAAAGATGAAATATTTGGCCCTGTGATGGCACTGATGAAGTTTAAGACTATTGAGGAAGCAATTAAGAGTGCTAATAATACTAGATATGGGCTAGCAGCAGGCATTGTGACCAAGGACATGGATATTGCAAACACTGTTTCGAGGTCCATCCGTGCAGGCATTATTTGGATCAACTGTTATTTAACCTTGGGAAGTGATGTTCCTTTTGGAGGATATAAATTGAGTGGATTTGGAAAAGATACGGGATTAGAAGCTCTTCACAAATACTTACAAGTTAAATCTGTTGTAACACCTATTTACAATTCTCCATGGCTTTGA 1512 0.4067 MTDLNSSNGNNSSLFKIPTIKYNKLFINGDFVDSVSGATFETIDPRTGDVIARISEGAKEDIDIAVKAAREAFDSGPWPRMSGVERGKIMMKFAELIEENIEELAALDAVDAGKLYSIAKVMEIPGAISIVRYYAGAADKIHGEVLKSSGQFHAYTLMEPIGVVGHIIPWNAPTSIFFTKVGPSLAVGCTMVLKPAEQTPLSALFYAHLAKLAGIPDGVLNVVPGFGPTAGAAISSHMDIDVVSFTGSVEVGREIMHAAAKSNLKHVSLELGGKSPLLIFDDADVDKAADLAILGILANKGEVCCASSRVFVQEGIYDQVEKKLVEKAKAWIVGDPFDPKTQQGPQADKNQLEKIISYIEHGKREGATLLTGGRRLGSEGYYIEPTIFSNVKEDMLIAKDEIFGPVMALMKFKTIEEAIKSANNTRYGLAAGIVTKDMDIANTVSRSIRAGIIWINCYLTLGSDVPFGGYKLSGFGKDTGLEALHKYLQVKSVVTPIYNSPWL 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00194 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491
Tsu02g00194 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491
Tsu02g00194 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491
Tsu02g00194 503 PANTHER CYTOSOLIC ALDEHYDE DEHYDROGENASE RF2C 5 503 - -
Tsu02g00194 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 503 - -
Tsu02g00194 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620
Tsu02g00194 503 SUPERFAMILY ALDH-like 16 499 IPR016161 GO:0016491
Tsu02g00194 503 Pfam Aldehyde dehydrogenase family 32 493 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00194 Tsu-Chr2 1649416 1655029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00194 4 503 Aldehyde Dehydrogenase Gene Family AT3G24503 68.463 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00194 K12355 - gmx:100779993 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00194 02 1649416 1655029 Tsu02g00194 02 1649416 1655029 ECH
Tsu02g00194 02 1649416 1655029 Tsu04g02652 04 29981413 29985372 ECH
Tsu02g00194 02 1649416 1655029 Tsu03g03285 03 45436482 45444598 PCT