Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00188 ATGAGTCGAATAAAGGAAGATGAGAAAAACGAACGAATTATTCGAGGTCTTCTCAAACTGACACCGAATCGAAGATGCATTAACTGTAACAGCATGGGACCACAATATGTATGCACAAATTTCTGGACGTTTGTTTGCACAAACTGCAGTGGAATACACCGGGAATTTACTCATCGAGTAAAATCGATATCCATGGCTAAGTTTAGTGCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGtgcaaaagaaatattttttaaagaatggGATCCACAAAGTAATTCTTTACCTGATAGCAGTAATGTTGACAGGCTACGGGACTTTATCAAGCATGTTTATGTGGATAGGAGATTCACTGGCGAAAGGTCCTATGACAAACCTCCAAGAGCAAAGGGTGACAAGGATGATTCCTATGAAAACAGGAGGCTGGAGACGTATCAGGGAGGATCTAAAAGCCCTCCGTATGAGGACACATATGAACGCCGTTACAGTGACAGATCTAGTCCAGGTGGAAGAAGTCCTGGACATGATCAAGAAAGGCATTATGCCGATCATAAGAGAAGCCCTGGCCGCCCTCCAATAATCAATGATTGGCGTCGTGAAGATAGATTTGGGGGTGGACAGAAATTTGAAGATCGTAGAATATCCGATGGAGGTAATAAGATGGAAAGCCAATCTCCCGAGCGAGCCAAAGACCTGGATTCTTCAAGTCCACCACCTGTTGTCCGACCTGTTAGAGAAATTCTGGGAGAAAATGTAGTACCTCTACGAATTAGTGAACCTCCCAAAGCAAACAGTGGACAGGCTTCTAATGGCTCAGCACTCACACAGAGAACGGCATCTTCCAGTAGTTTGGCATCCAGCAATGGAACCCCAGCAGAAGTTAAACTTGAGACAATCAGGAGCcttattgattttgatgataatcCTGAACCACCTATTGCTCCAGCAATACCTCAAGCCACACAAACTACCGCAGCTCAACTTGTGAATCCAACAAATTCTGGTGATAACAATTGGGCCTCCTTTGATGTTGCACCTGAGGTAAAAGTATCACAGGGTCATTCAAATGTAAATTCACTTGATTCTATGCTGTCCCAGTTGTCAGTTCCATCATCTTCACATGCTCAAGTTTCTGGAGCCCAAGGGCCTTTGGCGGGATCAGCTATTAATGCTACTGCTGGAGGAGCTCCAGCTGTGAGCAGCTTCGCAACTTTCCCAGCCAGTGTTGCTTCATTAACATCTTCTGGATTGACACCAGCATCACCTTTCAATAACGCAGGCTCGTGGCCTAGTTTGCAGTATCAGCAACAGCAACCGTTGTTCACATCTACTGTTGGTCAGCCTACTATTCAACAATCTACACTACCAGTTGGTGGCACTTTGAATAATCAGGGGCATCCAGTGACACATGTGTCAAAGGTTGTCGATGAAGAAAAGTCTGGTGTTGCTTCACAAAATTCTACTGTAAACATAAAACCAAGTGGAAGAAACGAACTTCCTGAGGATCTATTCGCTGTAAACTATTCATCTTTTCCTGCTCGAGTCCCAGGCTGGCAAATGGGTGCACCGCCTGGCATGGGTGTCTCAGTTCATTATAATAATGTGATGTCCGTGCCGAGGTTCCCACAACCATCTCAATCTACAAATCCATTTGATGTGATCAACGAAACAACTTCAGTGCAAGCCCCAACTTTTCCTTCTATGTCATCTTTGCAAAGTGCTCTGCCTAGTGTAACACCTTCAGCTACGGTGCACCCTTCAAACGTGGGTAATCAATCTTTTGCATGGAATCCACCGTCCTCGTTATCACACCCTTCAAACATGGGTAACCAATCTTTTGCATGGAATCCAGCCTCCTCGTTATCACATGCACCAATGCTGCCTCCACAAGCACAAACTCTTACCTCAGCAATGGGACCAAGGGCATACATGGAGCAACAAATGCCAACTAACATGCCAATGCCAAGGCATCAAGGAGTTGGGACTTTTGGAACCGAGGGAACTGCTTTTGGCTTCTCTAATATAGATCAGCAGCTGAATGGTAGGTTGCCAGCCTCTGCTACCTTAAATCCCTTCCCTGCAGGAGGTAATCCGTTCGGATGA 2115 0.4449 MSRIKEDEKNERIIRGLLKLTPNRRCINCNSMGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFSAQEVSALQEGGNQRAKEIFFKEWDPQSNSLPDSSNVDRLRDFIKHVYVDRRFTGERSYDKPPRAKGDKDDSYENRRLETYQGGSKSPPYEDTYERRYSDRSSPGGRSPGHDQERHYADHKRSPGRPPIINDWRREDRFGGGQKFEDRRISDGGNKMESQSPERAKDLDSSSPPPVVRPVREILGENVVPLRISEPPKANSGQASNGSALTQRTASSSSLASSNGTPAEVKLETIRSLIDFDDNPEPPIAPAIPQATQTTAAQLVNPTNSGDNNWASFDVAPEVKVSQGHSNVNSLDSMLSQLSVPSSSHAQVSGAQGPLAGSAINATAGGAPAVSSFATFPASVASLTSSGLTPASPFNNAGSWPSLQYQQQQPLFTSTVGQPTIQQSTLPVGGTLNNQGHPVTHVSKVVDEEKSGVASQNSTVNIKPSGRNELPEDLFAVNYSSFPARVPGWQMGAPPGMGVSVHYNNVMSVPRFPQPSQSTNPFDVINETTSVQAPTFPSMSSLQSALPSVTPSATVHPSNVGNQSFAWNPPSSLSHPSNMGNQSFAWNPASSLSHAPMLPPQAQTLTSAMGPRAYMEQQMPTNMPMPRHQGVGTFGTEGTAFGFSNIDQQLNGRLPASATLNPFPAGGNPFG 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00188 704 PANTHER ARFGAP/RECO-RELATED 2 606 IPR044820 GO:0005096
Tsu02g00188 704 PANTHER ARFGAP/RECO-RELATED 603 704 IPR044820 GO:0005096
Tsu02g00188 704 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Tsu02g00188 704 MobiDBLite consensus disorder prediction 123 296 - -
Tsu02g00188 704 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Tsu02g00188 704 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Tsu02g00188 704 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Tsu02g00188 704 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Tsu02g00188 704 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Tsu02g00188 704 PANTHER ARF GTPASE ACTIVATOR 2 606 - -
Tsu02g00188 704 PANTHER ARF GTPASE ACTIVATOR 603 704 - -
Tsu02g00188 704 MobiDBLite consensus disorder prediction 158 233 - -
Tsu02g00188 704 MobiDBLite consensus disorder prediction 582 611 - -
Tsu02g00188 704 MobiDBLite consensus disorder prediction 266 296 - -
Tsu02g00188 704 MobiDBLite consensus disorder prediction 123 145 - -
Tsu02g00188 704 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Tsu02g00188 704 CDD ArfGap_AGFG 11 121 - -
Tsu02g00188 704 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00188 Tsu-Chr2 1617845 1625499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00188 11 121 C2H2 Transcription Factor Family AT4G21160 33.333 3.02e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00188 - - gmx:100815114 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00188 02 1617845 1625499 Tsu02g00188 02 1617845 1625499 ECH