Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00186 ATGCAGAGATTGTCGGGTAGAGACTTTAATGGTTGTATAGATAAGCAATGTTCTGGTTTCGTCCAAGTAAATAATTATAAACCGTTTATTGAAGATGTTCGATCACCCAGCACTCTGATTGGTTCAGGGGGCAAAAAATCTGTTCTTGCAGTCCAAATTCAACggGATAAATCCACAGGTAATTGGTGGTTAACTATTGAAGACACTCTACAAATTGGATATTGGCCAAAAGAATTATTTACTCACTTAAGGGAAGGAGCATCTTTGGTTAGATTTATGGGTCAAGTTTGGGCTGGAGAAACTATGTTGTATCCCCCAATGGGTAGTGGAAGATTGCCTAAAGAAGGATATGATAACGCAGCTCTTTTCGGAAAACTCATGACTATTGATTCAGAATCTACTCAAGGTGATGTAGACCCCAAAGATATGAAACCATATAATGATGCTAATTCAAATTGCTATGATTTGTCGTATTATAACAATTACAACAacgatgaagaagaagaagaagatgtttCTTTAAGCTTTGGATTCACTCTTCATGCTCCATTCAATTCATTCTTCCCTCATTTCTCAAGTCAAGGGCAATTCACCTACGGTTTTTATCAGTTAGAAATGGATTTAGAAGAGAAGTTTCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCTGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCTTTCAGGAATACATGAAATATGGTCCAAAGAAGGAACTTCTTCAAACGTGCTTTGATAAGGACAAAAAGAACATGTCTTCAAAAAACAGGATGACTGAAGTCAAGTCATCTGGTAAGATAATTAAGAAACAAGACACAAAAAAGGTTTCTAGTCTTAATCGTCAGCCCTCAAAAAAGCAACATCGGAAGAGTGAAAACCCCATCCGACTCGTACCTCCTTCTAACCAGGCTTCTGATTTTGGACATCCGAGCACTTGGATCTGTAAAAATGCTGCTTGTAGGGCGGTTCTATCAGTGGATGACACATTTTGTAGGCGGTGTTCTTGTTGTATCTGTCAcctttttgatgataacaaggatCCCAGTCTTTGGTTAGTATGCACATCTGAATCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCACATTGAATGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAATTGGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGCTGGAAGAAACAACTGAATATTGCAAAAGATGCCCGGCGTGTAGATGTACTCTGTTATAGAATATATTTGAGCTACAGGCTCCTGAATGGAACTTCAAAATTTAAAGACCTGCATCAAATGGTACAGGAGGCAAAGGCTAAACTGGAGACAGAAGTTGGTCCTCTTGATGGAGTTTCTGCCAAAATGGCACGAGGCATCGTCAGTAGACTCCCTATTGCCAGTGATGTGCAGAGACTCTGCACTCATGCTATTGAGAAAGCTGACAGCTGGCTGGCCTCTGTTCCCAATTTAAATTCAGAGGGTTCACTTCCTGCTGCTTGcaaatttgtttttgaagatGTAACAGCTTCCTCTGTCAAAATCATTTTAAttgaaatgtcaaatatatGTTCTGAGGACATCAAGGGGTACAAGCTATGGTATTACAAGAGTCGGGATGAACCATCAACAAAGGATCCTGTTTCTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCCGACCTTCAACCTTGCACAGAATATACTTTTCGGATTATATCTTACACTGCCATGGGTGACCTGGGTCATTCTGAGGCTAAGTGTTTCACCGAGAGCATCGAGATAATTCAAAACAATCCCTCTAAGTCGGTTGCTTCGAATCATAAAAAACAGAACCCTCAAACCGATAGCAATTCTTCTGGCTGCAAGATGGAGCTCAATCCCGCAAAGACAGGCCCCAGATTTAAGGTTCGAGACCTTGGGAAAGTTTTGCGCCTTGCTTGGGCTCAAGAACGTGGTTACTTTGAGGAGTTTTGCTGTGCTGATATGAAAAATTGCTGTGCACAAGCCAAAATGAACAAGCCCAAAATTCCAGAAAGGCGGCTGCCTTCAGATTCACGAGGCCTTGATTTAAATGTTCTTTCAGTCCCTGATTTGAATGAAGACCTAACACCTTTTGAGTCTTCCAGGGATGAAGGTAATGGTTGCACTTTACTGCAGGCTGTTGAGGCAGATGATGATGCTGTTTCTCATGATCTACAGGAAAACAATAAAGCAAGATCACATAGGAGTGGCGACTCACAAACCTGGGCTCATGGGCCAAGAGAAGTCTCAGCTGCTGACTCTCGTGTAAATGCAGGCAGGAAAAGGGTTGCGAGCACAAATGAAGAGGCACATGATTGTGATAGTACTTTGATAAATGGTTCTCCTTTACGTATACCTGTTGGTTCCCGTTCCTTGGATGAAAACTTCGAGTATTGTGTGAAGGTTATCCGTTGGCTAGAGTGCGAGGGCCACATCAAACAGGAATTTAGGTTGAAATTGCTAACATGGTTTAGTTTGAGATCGACAGAGCAGGAACGCAGGGTTGTAAATACCTTCATTCAGACTCTCATGGATGATCCAAGTAGTTTGGCAGGGCAACTGGTTGACTCTTTCTCTGATATCGTTTCCAGCAAGAAGAGGCCAAGAAATGGACTCAATAGTAAAGCTGGAGCATCAAAATAA 2766 0.4056 MQRLSGRDFNGCIDKQCSGFVQVNNYKPFIEDVRSPSTLIGSGGKKSVLAVQIQRDKSTGNWWLTIEDTLQIGYWPKELFTHLREGASLVRFMGQVWAGETMLYPPMGSGRLPKEGYDNAALFGKLMTIDSESTQGDVDPKDMKPYNDANSNCYDLSYYNNYNNDEEEEEDVSLSFGFTLHAPFNSFFPHFSSQGQFTYGFYQLEMDLEEKFLAKVSGVQSLSSSVQSTPEKNGHSDDASRSSELFQEYMKYGPKKELLQTCFDKDKKNMSSKNRMTEVKSSGKIIKKQDTKKVSSLNRQPSKKQHRKSENPIRLVPPSNQASDFGHPSTWICKNAACRAVLSVDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTSKFKDLHQMVQEAKAKLETEVGPLDGVSAKMARGIVSRLPIASDVQRLCTHAIEKADSWLASVPNLNSEGSLPAACKFVFEDVTASSVKIILIEMSNICSEDIKGYKLWYYKSRDEPSTKDPVSVFPKSQRRILISDLQPCTEYTFRIISYTAMGDLGHSEAKCFTESIEIIQNNPSKSVASNHKKQNPQTDSNSSGCKMELNPAKTGPRFKVRDLGKVLRLAWAQERGYFEEFCCADMKNCCAQAKMNKPKIPERRLPSDSRGLDLNVLSVPDLNEDLTPFESSRDEGNGCTLLQAVEADDDAVSHDLQENNKARSHRSGDSQTWAHGPREVSAADSRVNAGRKRVASTNEEAHDCDSTLINGSPLRIPVGSRSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIVSSKKRPRNGLNSKAGASK 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00186 921 MobiDBLite consensus disorder prediction 269 322 - -
Tsu02g00186 921 SUPERFAMILY Fibronectin type III 535 613 IPR036116 GO:0005515
Tsu02g00186 921 Pfam Fibronectin type III domain 535 615 IPR003961 GO:0005515
Tsu02g00186 921 Pfam PHD - plant homeodomain finger protein 333 451 IPR032881 -
Tsu02g00186 921 Pfam Neprosin 10 166 IPR004314 -
Tsu02g00186 921 CDD FN3 534 613 IPR003961 GO:0005515
Tsu02g00186 921 Gene3D Immunoglobulins 530 626 IPR013783 -
Tsu02g00186 921 ProSiteProfiles Fibronectin type-III domain profile. 529 628 IPR003961 GO:0005515
Tsu02g00186 921 MobiDBLite consensus disorder prediction 269 294 - -
Tsu02g00186 921 CDD PHD_VIN3_plant 353 417 - -
Tsu02g00186 921 MobiDBLite consensus disorder prediction 768 810 - -
Tsu02g00186 921 PANTHER VIN3-LIKE PROTEIN 2-RELATED 260 916 IPR044514 GO:0010048|GO:0040029
Tsu02g00186 921 PANTHER VIN3-LIKE PROTEIN 1 260 916 - -
Tsu02g00186 921 MobiDBLite consensus disorder prediction 633 658 - -
Tsu02g00186 921 MobiDBLite consensus disorder prediction 633 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00186 Tsu-Chr2 1588736 1604163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00186 291 913 PHD Gene Family AT3G24440 47.476 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00186 - - gmx:100816128 1165.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00186 02 1588736 1604163 Tsu03g03262 03 44989970 44998401 PCT