Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00172 ATGATAACAATAACAACCTCGTTTTTTCCTTCATCATTCTCCTTATTCATCCTCTTCATTCTCTCCGCCACCACCTTCTTCCTCCGTCGCAAAAATGACCGGAAAACTCCACCAGGTCCACCAGGATTCCCAGTCATCGGTAGCCTTCACATGTTGGGTACCCTCCCACACAGAACCCTCCAATCTTTATCCAAAAAATACGGTCCAATAATGTCAATAAGGTTAGGACAAGTTCCAACAATCATTGTCTCTTCATCTTCAGCTGCAGAACAATTCCTCAAAACAAACGACCTTGTTTTCTCAAGTCGTCCAAAACTTGAAGCTACTCATTACCTCTCTTATGGTTCTAAAGGTTTGGTTTTCACTGAATACGGTGCTTATTGGCGTAACGTGAGGAAGATTTGTACTCTGCAGCTTTTAAGTGCTTCTAAAGTTGAGTCGTTTGCGCCTTTGAGGAAAAAAGAAATGGAATTGGCTATGAAATTGGTGGAGAAAGCTGCTAGTTTAGGTGAGGTTGTTGATGTGAGTGAAATTGTTCATAATGTGATTGTAGATATTGTTTATAAAATGGTGTTGGGGTGTAGTGTTGATGAGGAGTTTGATTTGAAAGGACAACTTCAATTGGGGATGGAACTTTCTGGTGCTTTTAATCTTGCTGATTATGTTCCTTTTCTTGGAGTTTTTGATCTTCAGGGATTAAAAAGAAGGTACAAGAGAACTAGTAAAGCAATAGACCAAGTGTTGGAGAAGATAATTAAGGAACATGAACAAAGTTCACCTGTACAAAAtgaagagaagaaacataaggACTTCGTAGACATTCTACTATCACTGATGCACCAACCGATCAACCCCTCTGATGAACAAAACCATGTCATTGATCGAACAAACATAAAGGCTATACTATTAGACATGATTGCCGGTGCATTTGAAACTTCTGCAACCATTGCGGAATGGGCTTTATCTGAGCTCATAAGACATCCAAGAGTGATGAAAAATCTCCAACAAGAGCTAGATAACGTGGTCGGGGTGAATAAATTAGTGGAGGAGAATGATTTGCCAAAGTTAAGTTATTTGGATATTTTGATCATGGAGACCTTAAGATTATATCCTGCAGGACCACTTGTGCCCCGCGAGTCAACAGAGGACGCTACGGTTCATGGTTATTTCgtaccaaaaaaatcaagagTAATTGTGAATTTATGGGCAATAGGAAGAGATTCTGAGGTATGGTCTAGTAACGCTGAAGAATTTTATCCAGAGAGATTCATAGATAAAAATTTAGACTACCGTGGAcatgattttcaatttatacCATTTGGTTATGGTCGAAGAGGATGTCCTGGTCTACACTTGGGACTAATTACGGTTAAACTTATTGTGGCTCAATTGGTACATTGCTTTTCATGGGAACTTCCCTCGAATATGACTCCAAATGATTTGGACATGACCGAAAAATTTGGTCTCTCAATCCCAAGAGCCAAACACTTGCTTGCGGTGCCAACATACCGTCTTTCTGAGGAAGCAACATGA 1533 0.3868 MITITTSFFPSSFSLFILFILSATTFFLRRKNDRKTPPGPPGFPVIGSLHMLGTLPHRTLQSLSKKYGPIMSIRLGQVPTIIVSSSSAAEQFLKTNDLVFSSRPKLEATHYLSYGSKGLVFTEYGAYWRNVRKICTLQLLSASKVESFAPLRKKEMELAMKLVEKAASLGEVVDVSEIVHNVIVDIVYKMVLGCSVDEEFDLKGQLQLGMELSGAFNLADYVPFLGVFDLQGLKRRYKRTSKAIDQVLEKIIKEHEQSSPVQNEEKKHKDFVDILLSLMHQPINPSDEQNHVIDRTNIKAILLDMIAGAFETSATIAEWALSELIRHPRVMKNLQQELDNVVGVNKLVEENDLPKLSYLDILIMETLRLYPAGPLVPRESTEDATVHGYFVPKKSRVIVNLWAIGRDSEVWSSNAEEFYPERFIDKNLDYRGHDFQFIPFGYGRRGCPGLHLGLITVKLIVAQLVHCFSWELPSNMTPNDLDMTEKFGLSIPRAKHLLAVPTYRLSEEAT 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00172 510 Pfam Cytochrome P450 37 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 Coils Coil 230 250 - -
Tsu02g00172 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Tsu02g00172 510 Coils Coil 331 351 - -
Tsu02g00172 510 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 88 109 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS E-class P450 group I signature 64 83 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 SUPERFAMILY Cytochrome P450 37 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 505 - -
Tsu02g00172 510 PANTHER CYTOCHROME P450 FAMILY PROTEIN 5 505 - -
Tsu02g00172 510 Gene3D Cytochrome P450 24 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu02g00172 510 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00172 Tsu-Chr2 1329205 1331710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00172 43 505 Monolignol Biosynthesis Gene Families AT4G36220 39.457 4.56e-123 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00172 - - gmx:100814172 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00172 02 1329205 1331710 Tsu02g00172 02 1329205 1331710 ECH