Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00169 ATGGTTAAGCGAAATTCgactaatgaaaaaaaaaaagttccaaaAACTAAGATTGTCCACATCAATGGAGCAAAGGAAAAGGTTTATCTGAAAAACACTGATCGAAAGAAAAGTGTAACAAGTAAATATAAAGGTGTTCGCCGTAGGCCATGGGGAAAATTTGCTGCTGAAATTCATAATCCTTTTGCAAAAAAAAGATTGTGGCTTGGAAGTTTTGAAATAGAAGAATTAGCAGCTGTGGCATATAGCCAAAAGTTTGATGAGTTTGAAAGAAGGAAAGCTGGATCTACATTAAGGGAGGATATAGACATTAATCAACCATGCAAGGAGCATGAAAACAACTATGATGAACCTCCCTCTGATGATGATAACTTTGGTGGTAATTCAAATAAGATGAATTTAGGTGTTCAAGAGATTCAACCCTTAATTCATTAA 435 0.331 MVKRNSTNEKKKVPKTKIVHINGAKEKVYLKNTDRKKSVTSKYKGVRRRPWGKFAAEIHNPFAKKRLWLGSFEIEELAAVAYSQKFDEFERRKAGSTLREDIDINQPCKEHENNYDEPPSDDDNFGGNSNKMNLGVQEIQPLIH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00169 144 MobiDBLite consensus disorder prediction 93 144 - -
Tsu02g00169 144 MobiDBLite consensus disorder prediction 93 118 - -
Tsu02g00169 144 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Tsu02g00169 144 ProSiteProfiles AP2/ERF domain profile. 42 107 IPR001471 GO:0003700|GO:0006355
Tsu02g00169 144 PANTHER DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 8 82 - -
Tsu02g00169 144 CDD AP2 41 82 IPR001471 GO:0003700|GO:0006355
Tsu02g00169 144 Pfam AP2 domain 41 82 IPR001471 GO:0003700|GO:0006355
Tsu02g00169 144 PANTHER DNA-BINDING DOMAIN 8 82 IPR044808 GO:0003700|GO:0009873
Tsu02g00169 144 SUPERFAMILY DNA-binding domain 41 89 IPR016177 GO:0003677
Tsu02g00169 144 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Tsu02g00169 144 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Tsu02g00169 144 Gene3D AP2/ERF domain 41 98 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00169 Tsu-Chr2 1300448 1300882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00169 37 108 AP2-EREBP Transcription Factor Family AT1G49120 53.425 3.20e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu02g00169 AP2 8.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00169 - K09286 cam:101510667 113.62