Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00160 ATGGCGTCAAAGACTTCCGATCCCTTTGATCATACGGAAGCTCTTGGCTCTTCGGGGAAAAAGATATCGGCAGTTGTTTTAGGTGTTTTAGGATTAATAGGTATAATATGGACTGTTTTTATTTGTATGAAAAACTATCGGGCTCGTCGAGCAGAGGAAGAAGCTAAATTGGCACATGCTACAACTCGACGAGAGAGGGTGAAAGTGTCAATATATGACACTGACCCTCCTCAATTTGGTCAGACAGAATGTGTTGTATGTTTGCAAGAATTTGCAAACACACAAACATATTTCAGTCTACCATGTGGACATATATTCTGCGAGGAATGTATGTCCATTGTCACATTAGAGTTTGAGGTGTGCCCTACTTGTAGGGTAACTATTTTAGATTAG 393 0.402 MASKTSDPFDHTEALGSSGKKISAVVLGVLGLIGIIWTVFICMKNYRARRAEEEAKLAHATTRRERVKVSIYDTDPPQFGQTECVVCLQEFANTQTYFSLPCGHIFCEECMSIVTLEFEVCPTCRVTILD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00160 130 Pfam Ring finger domain 83 125 IPR001841 -
Tsu02g00160 130 Coils Coil 43 63 - -
Tsu02g00160 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 129 IPR013083 -
Tsu02g00160 130 SUPERFAMILY RING/U-box 83 128 - -
Tsu02g00160 130 SMART ring_2 84 124 IPR001841 -
Tsu02g00160 130 ProSiteProfiles Zinc finger RING-type profile. 84 125 IPR001841 -
Tsu02g00160 130 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00160 55 129 C3H Transcription Factor Family AT3G10910 31.250 1.13e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00160 - K15695 pif:PITG_02501 55.8398