Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00152 ATGGCTGCAAAACGTTTTTTGGATGATTCTAATCAAGACAAAGACAAACCAAATGACAAACGGATTAGAACTACACCAACACCTTCTTTTGCTTCGGTAATAGGAGAAGTGGTTATGGTAAAAAACATGCAAAACCTTTTCTCTGGCTTGGAACCTTTACTTAGAAGAGTGGTGAACGAAGAGGTGGAACGAGCGATGACACAATGTTATCCACCGCGATCAATAACAAAGTCACCTTCATTGAGACTCAAAGCAGTGGAAGAACCATTAAGTTTTGAATTCATGTTCAAAAAGAAACTTTCACTTCCAATATTCACAGGTAGTAAAATGCTAGACATGGATGGAAACTCAATCAATGTGATTCTTGTTGACAAAAGCAATGGCCAAATAGTCCCTACAAGTTTACCTCACCCAATCAAGATTGAAATTGTAGTTCTTGATGGAGATTTTCCACCTAGTGAAAAGGAATCATCATGGACTAGTGAAGAATTCGATAGTAAAATTGTGAAAGAGAGAACCGGAAAGAGGCCATTGCTTACGGGAGAATTGAATCTTACTATGAGAGATGGAATTGCACCAATTGGAGATATTGAGTTCACCGATAATTCTAGCTGGATTCGTAGTAGAAAGTTTAGAGTTGCTGTTAGAATTGCTCCCGGGACTAATCAAAGTGTCCGAATTCGTGAAGGCATGACCGAACCTTTTGTTGTTAAGGATCATCGTGGTGAATTGTACAAGAAACACCATCCACCAAATCTAAAGGACGAAGTGTGGCGGCTAGAGAAAATTGGAAAAGATGGAGCTTTCCACAAAAAATTGACCAAAGAAGGAATCACTACGGTACAAGAGTTTCTCAAGTTATCGGTTGTTGATCCTCAAAGACTCAGAAAGATTTTAGGCGTGGGGATGTCAGAGAAAATGTGGGAAGTGACAATTAAGCATGCAAAAACTTGTGTAATGGGAAACAAACTATATGTCTACCGTGGGCCTCAAGTTATCATATATCTCAATGCCATATGCCAAATGATTAAAGCTTATATCAACGGCCAAATTATTTCCAACCGAGACATGGCCAGCATGAACAAGGGATACATAGAAAAATTGGTGAGAGAAGCATATGCTAGATGGAATGAGTTGGAGGAAATTGATGAAGTTTTGAATGATAACGTTGCTTTGTTAACTCAAGGTGAACCTGTGGAACAatttcaaaacaataataatcatCAAGCACCATATGatcaaaatgagttttttgGTGATAAATCTATGGAGGGTGGCAACTATGTAGCAAGCCATAATAATAATGCACAAATAGGTAGCATCCAGTGGTCACCACCATTTCCTACTTCACCATTCATATCTTATGGCTTCACGGATTCACAATCAGATGATGGTGACATAACGCCTTCAACTTCAGGACCGGTTGTTGATGGAGTTTCAAGGTGgctttga 1452 0.3822 MAAKRFLDDSNQDKDKPNDKRIRTTPTPSFASVIGEVVMVKNMQNLFSGLEPLLRRVVNEEVERAMTQCYPPRSITKSPSLRLKAVEEPLSFEFMFKKKLSLPIFTGSKMLDMDGNSINVILVDKSNGQIVPTSLPHPIKIEIVVLDGDFPPSEKESSWTSEEFDSKIVKERTGKRPLLTGELNLTMRDGIAPIGDIEFTDNSSWIRSRKFRVAVRIAPGTNQSVRIREGMTEPFVVKDHRGELYKKHHPPNLKDEVWRLEKIGKDGAFHKKLTKEGITTVQEFLKLSVVDPQRLRKILGVGMSEKMWEVTIKHAKTCVMGNKLYVYRGPQVIIYLNAICQMIKAYINGQIISNRDMASMNKGYIEKLVREAYARWNELEEIDEVLNDNVALLTQGEPVEQFQNNNNHQAPYDQNEFFGDKSMEGGNYVASHNNNAQIGSIQWSPPFPTSPFISYGFTDSQSDDGDITPSTSGPVVDGVSRWL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00152 483 MobiDBLite consensus disorder prediction 454 475 - -
Tsu02g00152 483 MobiDBLite consensus disorder prediction 1 26 - -
Tsu02g00152 483 Pfam Calmodulin binding protein C-terminal domain 323 382 IPR046829 -
Tsu02g00152 483 MobiDBLite consensus disorder prediction 454 483 - -
Tsu02g00152 483 MobiDBLite consensus disorder prediction 1 22 - -
Tsu02g00152 483 PANTHER PROTEIN, PUTATIVE-RELATED 1 474 - -
Tsu02g00152 483 PANTHER OS02G0177800 PROTEIN 1 474 IPR012416 GO:0005516
Tsu02g00152 483 Pfam Calmodulin binding protein central domain 253 318 IPR046830 -
Tsu02g00152 483 Pfam Calmodulin binding protein-like N-terminal domain 93 240 IPR046831 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00152 Tsu-Chr2 1136345 1139228 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00152 3 383 Calmodulin-binding Proteins AT5G57580 49.741 4.21e-121 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00152 - - gmx:100802257 654.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00152 02 1136345 1139228 Tsu02g00152 02 1136345 1139228 ECH
Tsu02g00152 02 1136345 1139228 Tsu03g03152 03 43543368 43548891 PCT