Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00128 ATGGCAGACGTTGAGATCGATGCAGCCACAGCAGCCGTCGGAGTCCCGAAGAAGAGAACATTCAAGAAGTTCACATTCAGAGGAGTTGATTTGGATGCTCTTCTTGACATGGGCACTGTTGAGCAAGTCAAGCTCTTCAATGCTCGTCCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGAATGCCTATGGCTCTCATCAAAAGGCTTCGCAAAGCGAAAATGGAGGCACCAGCTGGTGAGAAGCCAGAACCTGTTAGGACTCATCTTCGTAACATGATTATTGTTCCTGAGATGATTGGGAGCATTATTGGAGTGTACAATGGGAAGACTTTTAACCAGGTTGAAATCAAACCTGAGATGATTGGACATTACCTTGCTGAGTTCTCAATCTCATACAAGCCAGTTAAGCATGGTAGACCCGGTATTGGTGCTACTCACTCTTCCAGAGAAAGAGAGATGTCGGGTATGGGATATGGATATGTGGGCCCTTCCCAAGATGCAGTCCGgttcatttccagccctactTCTGGTAAATGCTTAATTGCCTCTTTAACTCTTGCTTATTCATGA 570 0.4456 MADVEIDAATAAVGVPKKRTFKKFTFRGVDLDALLDMGTVEQVKLFNARPRRRFQRGLTRMPMALIKRLRKAKMEAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSREREMSGMGYGYVGPSQDAVRFISSPTSGKCLIASLTLAYS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00128 189 Gene3D 30s Ribosomal Protein S19; Chain A 11 153 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 Hamap 30S ribosomal protein S19 [rpsS]. 50 143 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 ProSitePatterns Ribosomal protein S19 signature. 107 131 IPR020934 GO:0003723
Tsu02g00128 189 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 149 - -
Tsu02g00128 189 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 149 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 SUPERFAMILY Ribosomal protein S19 63 138 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 Pfam Ribosomal protein S19 52 137 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 PRINTS Ribosomal protein S19 family signature 87 106 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 PRINTS Ribosomal protein S19 family signature 107 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 PRINTS Ribosomal protein S19 family signature 119 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu02g00128 189 TIGRFAM uS19_arch: ribosomal protein uS19 21 149 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00128 Tsu-Chr2 898403 903750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00128 1 149 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 82.550 1.33e-85 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00128 K02958 - gmx:100499657 261.151