Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00110 ATGGCAGAACGTGGCGGAGACCGTGGTGGTTTTGGTGGCGGTTTCGGTGGACGAGGTGACAGAGGTGGTCGCGGTGGTCGTGGTGACAGAGGTCGTGGTGGTCGTCGTAGAGCAGGTGGAAGACGCGATGAAGAAGAGAAATGGGTTCCAGTAACCAAACTCGGTCGTCTCGTGAAAGAAGGAAAGATCCGTAGCCTTGAACAGATCTACCTTCATTCACTTCCAATCAAGGAGCATCAAATCATTGATACTCTCGTCGGTCCAACTTTGAAAGATGAAGTGATGAAAATCATGCCGGTTCAGAAACAAACCAGAGCCGGTCAAAGAACCCGGTTCAaagcttttgttgttgttggtgacAATAATGGTCACGTTGGTCTTGGTGTTAAGTGTAGCAAAGAAGTAGCTACTGCTATTCGTGGTGCTATTATCTTAGCAAAGCTTTCTGTTATTCCTGTTAGGAGAGGTTATTGGGGTAATAAGATTGGAAAGCCACACACTGTTCCTTGCAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTTTTGCAATTTGCTGGTATTGATGATGTTTTCACTTCCTCCAGGGGTTCTACCAAAACCCTTGGAAATTTCGTCAAGGCTACATTTGACTGTTTGATGAAAACCTACGGGTTTTTGACACCTGAATTCTGGAAGGAAACTAGGTTCTCCAGATCTCCATTCCAAGAGTTCACTGATTTGTTGTTAGCTAAGCCAATTGGAAAGGCTTTGCTCCCTGAGGAAGAAAGGGTGGAGGCTTGA 840 0.45 MAERGGDRGGFGGGFGGRGDRGGRGGRGDRGRGGRRRAGGRRDEEEKWVPVTKLGRLVKEGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPEFWKETRFSRSPFQEFTDLLLAKPIGKALLPEEERVEA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00110 279 Pfam Ribosomal protein S5, C-terminal domain 174 246 IPR005324 GO:0003735|GO:0005840|GO:0006412
Tsu02g00110 279 Gene3D - 47 152 - -
Tsu02g00110 279 MobiDBLite consensus disorder prediction 22 45 - -
Tsu02g00110 279 Pfam Ribosomal protein S5, N-terminal domain 90 154 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g00110 279 SUPERFAMILY Ribosomal protein S5 domain 2-like 166 246 IPR020568 -
Tsu02g00110 279 PANTHER BNAC04G47870D PROTEIN 2 268 - -
Tsu02g00110 279 MobiDBLite consensus disorder prediction 1 45 - -
Tsu02g00110 279 PANTHER RIBOSOMAL S SUBUNIT 2 268 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Tsu02g00110 279 Gene3D - 153 246 IPR014721 -
Tsu02g00110 279 SUPERFAMILY dsRNA-binding domain-like 86 155 - -
Tsu02g00110 279 TIGRFAM uS5_euk_arch: ribosomal protein uS5 43 250 IPR005711 GO:0003735|GO:0006412|GO:0015935
Tsu02g00110 279 ProSitePatterns Ribosomal protein S5 signature. 107 139 IPR018192 -
Tsu02g00110 279 ProSiteProfiles S5 double stranded RNA-binding domain profile. 90 153 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00110 Tsu-Chr2 780096 782551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00110 44 265 Cytoplasmic Ribosomal Protein Gene Family AT3G57490 91.892 1.26e-152 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00110 K02981 - gmx:100797105 472.626