Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00108 ATGGCACTTTCCATTAAAAAAGAATTGTTTCCTCAACAATTTTCATCCAATATTAGGCTTCTTGTGATTGATCATGATATCAATCTTCTCAATGCTATTCAGAATGCATGCTATAAATTCCATTACTCAGTCAAGACATGCTTGAAGGTTTCAGATGCTTTGAAtcttttgaaggaaaaaaaggaTAGTTTTGATTTGGTACTAATTGAAGCTAAAATGCCTGATATGGATTCATATGGATTTTTGCGATATGTTACACAACAAATCAATATCCCTGTTATTATGATGTGTGCTGATAACAGAAGAAGCGTTGTGATCAAAGCTATTGATGATGGAGCTTGTGATTATTGGACCAAACCTTTGTGTGAGACTCTAATCCAAAACATGTGGCAACATGTTGCAAGGAAACTttggaataaaaataaaaacctagaATTAAGCGAGGATGAATTTGGTATGAAAAGACAGGAGAGATATGATTCAAAATTACCGTTAATTGATCCAAAATTAGAAGGAGTGATCAACACTAGTGTAAAACAAGAGAGCGTTGAAAATAATAATGACGAACCTGAATCTTCAACAAAGAAGGCACGCGTTAAATGGTCATCAGAGTTgcataaaaaatttgttaatgTTGTGATGGAGCTCAATGTTGATAaGGCAGTGCCCAAAAAAATTCTTGCAAGGATGAATGAGCCTGGATTGACAAGAGAGCATGTAGCTAGTCACTTACAgAAATATAAGCAATTTTTGAAGAGAGGAGagacaaagaaacaaaaaaaacagaacagaatTGCCGAAGCTATAGACACCAAGATTTCAAATGAATCTTCAGAATTTGATTTTCAAGCTTATAATGCTTCTATTCCTCGTGTTGTTCCCAATAATTTGACACCAACAAGTTTTCCTCAACAGCCCAACAATTTGATTCCTCCTGTTAATGCAGTTCCAGTTAATGCTTATCAAACTGATTCTGAAGAAGAAACTAGTTCATCAGCTTCTATTAACCAGCAAAATTGCAGTGGATTTGGGACTAATTCTATTATTAATCCATCATTTCTAAATGCTCTTGATGCACGTTATCCAAACGTGcaagttcaaaatattttcttagcCTGGCATAATCCGTCAACAAATTCCAATGACTCAACCTCTTCCAATGGTCTTTGA 1170 0.3214 MALSIKKELFPQQFSSNIRLLVIDHDINLLNAIQNACYKFHYSVKTCLKVSDALNLLKEKKDSFDLVLIEAKMPDMDSYGFLRYVTQQINIPVIMMCADNRRSVVIKAIDDGACDYWTKPLCETLIQNMWQHVARKLWNKNKNLELSEDEFGMKRQERYDSKLPLIDPKLEGVINTSVKQESVENNNDEPESSTKKARVKWSSELHKKFVNVVMELNVDKAVPKKILARMNEPGLTREHVASHLQKYKQFLKRGETKKQKKQNRIAEAIDTKISNESSEFDFQAYNASIPRVVPNNLTPTSFPQQPNNLIPPVNAVPVNAYQTDSEEETSSSASINQQNCSGFGTNSIINPSFLNALDARYPNVQVQNIFLAWHNPSTNSNDSTSSNGL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00108 389 Gene3D - 16 155 - -
Tsu02g00108 389 MobiDBLite consensus disorder prediction 177 196 - -
Tsu02g00108 389 CDD REC_typeB_ARR-like 21 134 - -
Tsu02g00108 389 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
Tsu02g00108 389 Gene3D - 192 253 - -
Tsu02g00108 389 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Tsu02g00108 389 Coils Coil 251 271 - -
Tsu02g00108 389 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Tsu02g00108 389 SUPERFAMILY CheY-like 16 147 IPR011006 -
Tsu02g00108 389 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 338 IPR045279 GO:0009736
Tsu02g00108 389 SMART REC_2 18 130 IPR001789 GO:0000160
Tsu02g00108 389 Pfam Response regulator receiver domain 21 124 IPR001789 GO:0000160
Tsu02g00108 389 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
Tsu02g00108 389 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00108 Tsu-Chr2 768424 770271 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00108 13 290 Response Regulator Gene Family AT4G31920 36.364 1.41e-46 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu02g00108 Response_reg 1.6e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00108 - K14491 cam:101491966 266.544